PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04062.1.g00030.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family BBR-BPC
Protein Properties Length: 349aa    MW: 38686.9 Da    PI: 10.0571
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04062.1.g00030.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind75.81.7e-2312491203
                     GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki..............rernlalsekkaavaerd........ 57 
                                   mdddgs   rn+g+ye     k nlglqlms +a +rd+k               +   +  +++++++++rd        
  Zpz_sc04062.1.g00030.1.sm.mk   1 MDDDGSLGiRNWGFYETV---KGNLGLQLMSPVApDRDTKSllpnstflhhhghqNAPGQQHHQQQHSHQPRDfgagggas 78 
                                   9*****999******988...**********9999******99999999987632111222344555566777******** PP

                     GAGA_bind  58 ...........maflqrdkalaernkalverdnkllalllvensla...........salpvgvqvlsgtksidslqq..l 114
                                              m+f++++++l+   ++   +++k+l+  ++ +               ++p+++q++++++++ ++ q   
  Zpz_sc04062.1.g00030.1.sm.mk  79 aampteqrpvhMDFTRNEAWLHP-SQHQRAHEQKVLHFGPAGHVGHpghavhpghvvRHHPASYQMMPDARHALQMMQppE 158
                                   ***********************.8888889999999999988777888999**999999*******99988655544232 PP

                     GAGA_bind 115 se.....pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskae 190
                                          pql+++  +  +ee  +    +e ++ +++++ +kkrq  ++pk++k kk+kk   +++++ ++++  +r++ +
  Zpz_sc04062.1.g00030.1.sm.mk 159 -AqsqpqPQLQPQEHPPCKEEGASPAL-VEDHSMVRNEQPVKKRQLRRQPKSPKPKKPKK-AVVPREDGAPNRPAPRARGP 236
                                   .13567788888888866666555555.5556667777777889****************.67888888888877****** PP

                     GAGA_bind 191 kksidlvlngvsl 203
                                   kk ++++ ++  l
  Zpz_sc04062.1.g00030.1.sm.mk 237 KKAVGMNTDTCVL 249
                                   ******9887655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062177.5E-341246IPR010409GAGA-binding transcriptional activator
SMARTSM012262.3E-271252IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDDDGSLGIR NWGFYETVKG NLGLQLMSPV APDRDTKSLL PNSTFLHHHG HQNAPGQQHH  60
QQQHSHQPRD FGAGGGASAA MPTEQRPVHM DFTRNEAWLH PSQHQRAHEQ KVLHFGPAGH  120
VGHPGHAVHP GHVVRHHPAS YQMMPDARHA LQMMQPPEAQ SQPQPQLQPQ EHPPCKEEGA  180
SPALVEDHSM VRNEQPVKKR QLRRQPKSPK PKKPKKAVVP REDGAPNRPA PRARGPKKAV  240
GMNTDTCVLL HRKSPAVLPM GCRGLAVCML HNFYFNVSAT NEHKAPGCAY CWKEDEPRAL  300
GIGLTNAAGL LARDTLGERA GLLTMLDFDE ERKGGKKGKR AVGWSRWLE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04062.1.g00030.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0542679e-56BT054267.1 Zea mays full-length cDNA clone ZM_BFb0206F22 mRNA, complete cds.
GenBankBT0640159e-56BT064015.1 Zea mays full-length cDNA clone ZM_BFc0131I22 mRNA, complete cds.
GenBankFP0983319e-56FP098331.1 Phyllostachys edulis cDNA clone: bphylf058a01, full insert sequence.
GenBankKJ7280449e-56KJ728044.1 Zea mays clone pUT6190 BBR-BPC transcription factor (BBR2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461880.13e-83protein Barley B recombinant
RefseqXP_021309578.13e-83protein Barley B recombinant
SwissprotQ8GUC32e-54BBR_HORVU; Protein Barley B recombinant
TrEMBLC5X4B56e-82C5X4B5_SORBI; Uncharacterized protein
STRINGSb02g009750.11e-82(Sorghum bicolor)
STRINGSb02g009782.11e-82(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.32e-08basic pentacysteine 2