PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04071.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 675aa    MW: 70644.9 Da    PI: 8.6978
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04071.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00017121141323
                                   ETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                                   C+ C+k F r  nL+ H r H
  Zpz_sc04071.1.g00010.1.am.mk 121 CEVCNKGFQREQNLQLHRRGH 141
                                   *******************88 PP
2zf-C2H211.50.00095196218123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC +C+k++  +s+ k H + +
  Zpz_sc04071.1.g00010.1.am.mk 196 WKCDKCSKRYAVQSDWKAHSKIC 218
                                   58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-5118141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.92E-8118141No hitNo description
SMARTSM003550.025119141IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.97119141IPR007087Zinc finger, C2H2
PROSITE patternPS000280121141IPR007087Zinc finger, C2H2
SMARTSM0035589161191IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4184217IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.92E-8191216No hitNo description
SMARTSM00355140196216IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
SGARTRGGAA HCGCNPGESE SPEEVMASNS SVAFFGIRDG DQQDQIKPLI PPQQQLGAAL  60
PGVPDATTAA SGHGAPAAAP PPPKKKRTLP GKSLFLFDSD PDAEVIALSP KTLLATNRFL  120
CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK NPLQAQRRRV YVCPEPTCVH HDPARALGDL  180
TGIKKHFSRK HGEKKWKCDK CSKRYAVQSD WKAHSKICGT REYRCDCGTL FSRIRVLFGL  240
AATWLWMPCD ERGAAPRPPG RGRWRPVGNC SHEPGGRARS TPFHGYVTMP LRDSFITHRA  300
FCDALAQESA RLPPTSLSSL TGHLYGAANA GNMALSLSQV GSHLNSTFQD GQHHHPPPEL  360
LRLGGMAGGS SIAARLDHLL SPSGASAFRS QQAPPSSAFF LNAAAGQDFG DGAGNGPHSF  420
LQSKPFHGLM QLPDLQGNGA GGPGASGPGL FNIGFFAGNT NSSGSSHEHA SQGLMSNDQF  480
SGGAGGGGGG GGSEAGIFGG NYIGGGDQVP QAGLFNDQAA SMLPQMSATA LLQKAAQMGA  540
TSSPNGAASM FRGFMGSSPH VRQATPHMEQ SDANLNDLMN SLAGGGVNAG GMFGGSNGGD  600
GAGMFDPRQL CNMDQEVKFG QGSGDVTRDF LGVGGGSIVR GISTPRGDHQ SSSDMSSLEA  660
EMNKSTSSFN GGRMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-21192233344Zinc finger protein JACKDAW
5b3h_F1e-21192233344Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1480492SGGAGGGGGGGGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04071.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446943.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_021318855.10.0protein indeterminate-domain 5, chloroplastic
TrEMBLA0A1D6E3190.0A0A1D6E319_MAIZE; Naked endosperm1
STRINGSb06g025550.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.27e-84C2H2-like zinc finger protein