PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04158.1.g00060.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 203aa    MW: 21650.8 Da    PI: 7.4682
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04158.1.g00060.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.9e-101154247
                                  SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  g++ + Ed+++ +    +G+  W+ Ia+ ++ gRt+  +k++w++ 
  Zpz_sc04158.1.g00060.1.am.mk 11 GNFVPAEDKIICEMYSTMGSC-WSVIAAQLP-GRTDLAVKNYWNST 54
                                  678899***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.24E-13260IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-18258IPR009057Homeodomain-like
PROSITE profilePS5129414.538559IPR017930Myb domain
SMARTSM007171.5E-10957IPR001005SANT/Myb domain
PfamPF002494.8E-91154IPR001005SANT/Myb domain
CDDcd001679.93E-81255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
LNYLRLGLKH GNFVPAEDKI ICEMYSTMGS CWSVIAAQLP GRTDLAVKNY WNSTLKKRFR  60
PAARTAAFAR RRLHPSPTAS TSDAGTPARD LQLVVHSDES STAGSPTSVK AVHPLGPVGA  120
GREPIEAVPV RVSAPVKTDV GGLPLTTPTA PPPPERCGQT GGMAMDIICV PMSPLPLDVT  180
DPELACICGF DDIHSFLPWF DGH
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04158.1.g00060.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661280.19e-69transcription factor RAX2
TrEMBLA0A3L6TU282e-68A0A3L6TU28_PANMI; Transcription factor RAX2-like
STRINGSi037244m4e-68(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122282638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.12e-21myb domain protein 68