PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc04199.1.g00040.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ZF-HD

Protein Properties

Length: 180aa MW: 18059.1 Da PI: 7.5642

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc04199.1.g00040.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	27.5	7.2e-09	127	147	3	23
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavD 23 kv Y+eCl+NhAa+lGgh+ Zpz_sc04199.1.g00040.1.am.mk 127 KVSYRECLRNHAAALGGHVAH 147 799***************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.5E-5	128	146	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
SGAGLGLSVS GLGDGESAVE DSGLGAGGWR LRVDGVVRVK VGLPRSLGLS SAETSRSHAL 60 GRPVSGCQAT HALMEFTSSR GQEQVPIQEM GASSTPPLAP AAVPRAPPTS SSGNGAGAAA 120 SAAPLPKVSY RECLRNHAAA LGGHVAHAAR DEREADKGVM NALQGNCETE IKGDNKKGET

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc04199.1.g00040.1.am.mk

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP815	35	145