PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc04250.1.g00020.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 825aa MW: 88175.2 Da PI: 10.858

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc04250.1.g00020.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.8	3e-06	359	387	3	31
HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 3 rahnerErrRRdriNsafeeLrellPkas 31 +h+ +Er RR++i +++ L++l+P +s Zpz_sc04250.1.g00020.1.am.mk 359 NSHSLAERLRREKISERMKLLQDLVPGCS 387 58************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.4E-7	354	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.80E-4	354	390	No hit	No description
PROSITE profile	PS50888	9.883	356	413	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.1E-7	359	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 825 aa Download sequence Send to blast
MTARSSTGEC NAPRPASVAV HKTGQRESGN KTWMAKEARR AHPYWATIFS SSLGTRKPLG 60 VARNLSRLVI YVACGPRSGE PEVVSFPLLG FPALLHRATS ALLREVQPRS TDMNNESNEK 120 GMESNRASSG VAGIPVEWQN QFSAAFPCPP AQQQAPMMDS FASAGLWAST SQAMGLSDAI 180 SAARGTGFLA PVPGFLPQGL GHFPVDSGFI ERAARASCFG GGGEMMGSSA GFGAADQPMS 240 NAFSGSSEAL LDRQRKDGND KAEPELDGHE EVPSSEAAGG DCSSKGTLDS KKRRRPNEVQ 300 SSNLPANSAN ESVHSKDKGE ESSPATTAGK SKGKGAKETS DAQKEEYIHV RARRGQATNS 360 HSLAERLRRE KISERMKLLQ DLVPGCSKVT MAYPSLGSQD LSMRPSQDGF QMRSRTGRRS 420 TPMKPASHPC AAVRDTLARL RRPVRLHAAG RLARSRWVGV SYGDSDAGSD NPARASGPAC 480 HIPSTCLAPR ARCRRSRSPT NVHRRTPVEV VRAPRDESRF VPRTRCHLPR HALYSTTAFL 540 SPEELNMNSP AGRPFLSISS VFADRPLPTR TLRVAATDIP GPSPEPHGMH GRMENWKDKQ 600 HSQHGAATCN WNVARSYRCL RLSETSFSSA PRGMTQMRRP CGAQGQRPET TRGHVRSSDS 660 GLPAQQQLTS GTGTPMVGTG MARGRRGPAT IAATWPDPAQ PGGGTACPEG GASPSPVSIS 720 PPPFGAPDHS PISSTLPHLG MQQPVVPRRA INTDTSLALF LVECGTGRSL KCKRGIAAPG 780 REPCLAVASA WNYGGNQIAR TTASVRGATR PRIKKRERLD TARTV

Sequence ? help Back to Top

Protein Sequence Length: 825 aa Download sequence Send to blast

MTARSSTGEC NAPRPASVAV HKTGQRESGN KTWMAKEARR AHPYWATIFS SSLGTRKPLG  60
VARNLSRLVI YVACGPRSGE PEVVSFPLLG FPALLHRATS ALLREVQPRS TDMNNESNEK  120
GMESNRASSG VAGIPVEWQN QFSAAFPCPP AQQQAPMMDS FASAGLWAST SQAMGLSDAI  180
SAARGTGFLA PVPGFLPQGL GHFPVDSGFI ERAARASCFG GGGEMMGSSA GFGAADQPMS  240
NAFSGSSEAL LDRQRKDGND KAEPELDGHE EVPSSEAAGG DCSSKGTLDS KKRRRPNEVQ  300
SSNLPANSAN ESVHSKDKGE ESSPATTAGK SKGKGAKETS DAQKEEYIHV RARRGQATNS  360
HSLAERLRRE KISERMKLLQ DLVPGCSKVT MAYPSLGSQD LSMRPSQDGF QMRSRTGRRS  420
TPMKPASHPC AAVRDTLARL RRPVRLHAAG RLARSRWVGV SYGDSDAGSD NPARASGPAC  480
HIPSTCLAPR ARCRRSRSPT NVHRRTPVEV VRAPRDESRF VPRTRCHLPR HALYSTTAFL  540
SPEELNMNSP AGRPFLSISS VFADRPLPTR TLRVAATDIP GPSPEPHGMH GRMENWKDKQ  600
HSQHGAATCN WNVARSYRCL RLSETSFSSA PRGMTQMRRP CGAQGQRPET TRGHVRSSDS  660
GLPAQQQLTS GTGTPMVGTG MARGRRGPAT IAATWPDPAQ PGGGTACPEG GASPSPVSIS  720
PPPFGAPDHS PISSTLPHLG MQQPVVPRRA INTDTSLALF LVECGTGRSL KCKRGIAAPG  780
REPCLAVASA WNYGGNQIAR TTASVRGATR PRIKKRERLD TARTV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc04250.1.g00020.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121418	5e-75	AK121418.1 Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence.
GenBank	HQ858863	5e-75	HQ858863.1 Oryza sativa Japonica Group isolate UT1672 bHLH- transcription factor mRNA, partial cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	5e-27	bHLH family protein