PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04295.1.g00080.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 112aa    MW: 12564.9 Da    PI: 5.0473
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04295.1.g00080.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.12.2e-081263156
                           AP2 31 fslgkfgtaeeAakaaiaarkklege 56
                                  ++lg+f tae Aa+a+++a+++++g+
  Zpz_sc04295.1.g00080.1.am.mk  1 VWLGTFATAEAAARAYDRAARRIRGA 26
                                  7**********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-4125IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-10134IPR016177DNA-binding domain
SMARTSM003802.2E-5139IPR001471AP2/ERF domain
PROSITE profilePS5103213.195133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-16134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
VWLGTFATAE AAARAYDRAA RRIRGAKAKV NFPNEDPPPD NEYDDHVMMP VDYDAVLGLF  60
QHHPPYVHDA VPVNAAPEVA YVHHHQQQQQ QHDVDAGIEL WTFDNIGTTV PI
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04295.1.g00080.1.am.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2444684e-55DQ244468.1 Zea mays clone 7948 mRNA sequence.
GenBankEU9768704e-55EU976870.1 Zea mays clone 992413 mRNA sequence.
GenBankKJ7283484e-55KJ728348.1 Zea mays clone pUT6630 AP2-EREBP transcription factor (EREB200) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644689.19e-23ethylene-responsive transcription factor RAP2-3
TrEMBLA0A0E0LPQ72e-23A0A0E0LPQ7_ORYPU; Uncharacterized protein
STRINGOPUNC07G24590.13e-24(Oryza punctata)