PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04299.1.g00020.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 178aa    MW: 19486.2 Da    PI: 9.8892
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04299.1.g00020.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.4e-10534130
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                                  ++rWT+eE+  l+ +v+++G+g W+tI r 
  Zpz_sc04299.1.g00020.1.sm.mk  5 KQRWTAEEEAALKAGVARHGPGKWRTILRD 34
                                  79*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.087151IPR017930Myb domain
SuperFamilySSF466898.97E-10250IPR009057Homeodomain-like
PfamPF002491.1E-6533IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-10550IPR009057Homeodomain-like
CDDcd116604.42E-15678No hitNo description
SuperFamilySSF467851.58E-5143177IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150412.674145178IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.107.9E-6145177IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MGAPKQRWTA EEEAALKAGV ARHGPGKWRT ILRDPDFGPL LSLRSNVDLK VGPAARRGSR  60
GGSAGRFCEF AGDKWRNLSV TAGGYGSREK ARMALKKGRH VPKVPAESME VDEYHMDNVH  120
NAFLDVQPLA MVVEPLQLGD SPDKSVVRLD EIIFEAIKNL KKASGSNKAA IASYIEEY
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04299.1.g00020.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794602e-49HF679460.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB54 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818200.11e-74single myb histone 1
SwissprotB4FT407e-73SMH2_MAIZE; Single myb histone 2
TrEMBLA0A0A9F8042e-76A0A0A9F804_ARUDO; Uncharacterized protein
STRINGPavir.Ea02064.1.p2e-75(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-43telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]