PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04346.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 591aa    MW: 63345.6 Da    PI: 8.8738
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04346.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.6e-05526223
                                  EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                                  +C+ C+++F ++  L  H+r H
  Zpz_sc04346.1.g00020.1.am.mk  5 TCKLCSRRFASPRALAGHMRAH 26
                                  6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.02426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66427IPR007087Zinc finger, C2H2
PfamPF138943.8E-4526No hitNo description
SuperFamilySSF576674.66E-6526No hitNo description
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576674.66E-6165189No hitNo description
PfamPF139121.3E-9169194IPR007087Zinc finger, C2H2
SMARTSM0035575170190IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.642170199IPR007087Zinc finger, C2H2
PfamPF139121.2E-4241255IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MAKNTCKLCS RRFASPRALA GHMRAHSVAA AKSQISSASS ASTSVVAGGD DDGDAKKPVQ  60
GYVLREKPKR RVRLAEPDFS DRESETTGFF PSSPSPTNGH AGSGGDAEPA SSVSDAATPE  120
EDVALSLMML SRDFWPSPPP SLPSYHRDDS DAECGARPAI AVAAQKRTRY ECSACKKAFR  180
SYQALGGHRA SNVRGGKGGC CAPPLHTPPP SPPQPLPAVR DGAEGGSLEA AAAPVPPLLS  240
RFSSGQALGG HRRSHLCSAP VAAEDSPISN PPVAMKSHGF IDLNLPPTLD DVEVSAVSDA  300
RIPSSRRSPA QLVLLQSFLS SRGAAPRARH ERRKECGLQI ERIAKISFES YSALAGGFVR  360
TRVLYEDAVG YDGIYSYLDF CQGEELVVGY LHVWRRVVGY THGPRPQYTW HRFCRNLPLC  420
SALGLRCGVD RVSGQQWWSP ASGGALVAPA ARARAALVCS SAWQRYAVFP LVVAPETFAD  480
FVEAMVVALK DWKMSLKSHR FFVGTLYRTD DDNTADGSSV CRSLITRRRL AAACARGPYT  540
EWTARRGEQL CPAVQGTRVP EPSLCLVLTS GRAALDCETS RTLDPSPVGS R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16672KPKRRVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04346.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976448.19e-89zinc finger protein ZAT1
TrEMBLA0A3L6Q7111e-109A0A3L6Q711_PANMI; Zinc finger protein ZAT1-like
STRINGOPUNC04G18700.16e-96(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.15e-19C2H2-like zinc finger protein