PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc04370.1.g00010.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 116aa MW: 12830.9 Da PI: 4.6858

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc04370.1.g00010.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40.9	3.5e-13	45	71	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtGtC yGdrC+++H++ Zpz_sc04370.1.g00010.1.sm.mk 45 PGEADCTYYLRTGTCAYGDRCRYNHPR 71 57899********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.488	44	72	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.2E-6	44	71	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-10	46	71	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-7	48	73	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-6	50	72	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MELQGGEESA GGGGHSGTTG LEEAFQELEV RGEEEAAEAR LPERPGEADC TYYLRTGTCA 60 YGDRCRYNHP RDRRAAASLP WGGQGWCAEH TGHSDNDRRV ELHSIGWWEM SSFLKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc04370.1.g00010.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001357554.1	9e-21	zinc finger CCCH type domain-containing protein ZFN-like 3
Swissprot	Q5NAV3	2e-18	C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBL	A0A0A9P980	4e-22	A0A0A9P980_ARUDO; Uncharacterized protein
STRING	GRMZM2G475017_P01	3e-20	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17256	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06410.1	5e-12	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]