PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc04533.1.g00010.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 235aa MW: 25185.6 Da PI: 9.001

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc04533.1.g00010.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	106	128	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F++ L H+++H Zpz_sc04533.1.g00010.1.am.mk 106 YTCGYCKREFRSAQALGGHMNVH 128 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.63E-6	105	133	No hit	No description
PROSITE profile	PS50157	11.094	106	133	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.6E-6	106	129	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	108	128	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MVVNVSSPLS DLLGSGSFGR LKGVLSRRKA PARLGKTCHL VFPGTASDKV DYSHNTPQAM 60 ERDHGRGLKH QHQHQQQQVA WTPGHNFGLS GCFSWPAVPQ PLTSSYTCGY CKREFRSAQA 120 LGGHMNVHRR DRARLRQCCP GYAPSPNLIA AHHRRAAAAG PPLSNLNFVP PHCAGATTTE 180 PVVYSFFSTT TTSAMKAAVQ VNLELGISGG VCGHDGAVPE EGGLDLELRL GCPLE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc04533.1.g00010.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU959193	3e-36	EU959193.1 Zea mays clone 211832 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975075.2	3e-53	transcriptional regulator SUPERMAN
TrEMBL	A0A1E5W4I1	3e-60	A0A1E5W4I1_9POAL; Uncharacterized protein
STRING	Pavir.J31403.1.p	2e-54	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4667	30	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23130.1	4e-17	C2H2 family protein