PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04580.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 99aa    MW: 11218.7 Da    PI: 8.0289
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04580.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93.1e-102254134
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkg 34
                                  +g W++eEde+l + ++++G  tW+++a+  g +
  Zpz_sc04580.1.g00010.1.am.mk 22 KGLWSPEEDERLFNQITLHGVSTWSSVAQLAG-K 54
                                  678***************************99.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.5621755IPR017877Myb-like domain
SuperFamilySSF466893.73E-72056IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-92154IPR009057Homeodomain-like
PfamPF002494.3E-72255IPR001005SANT/Myb domain
CDDcd001675.79E-52555No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MVRKPSHDDA GRPSTGENKE RKGLWSPEED ERLFNQITLH GVSTWSSVAQ LAGKKITFHF  60
HWCLWEHGHD LFLAMRVGVL SHVHDACARL AACRDACRA
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04580.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029128e-35AP002912.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028E10.
GenBankAP0033398e-35AP003339.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1276_B06.
GenBankAP0149578e-35AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY4593438e-35AY459343.1 Oryza sativa (japonica cultivar-group) clone CL018501.1 R2R3-MYB gene region.
GenBankCP0126098e-35CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313424.15e-21transcription factor MYB82-like
TrEMBLA0A1W0VVS11e-19A0A1W0VVS1_SORBI; Uncharacterized protein
STRINGPavir.Ea00594.1.p2e-19(Panicum virgatum)
STRINGPavir.J24104.1.p1e-18(Panicum virgatum)
STRINGGRMZM2G143274_P011e-18(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2112166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.16e-11myb domain protein 67