PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04618.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 808aa    MW: 86149 Da    PI: 8.9726
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04618.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.91.5e-142022513687
                      trihelix  36 kkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                                   +k++e+g++rs+k+Ckek+en+ k+yk++ke++ +r  ++ +t+++f+qlea
  Zpz_sc04618.1.g00020.1.am.mk 202 EKLAEQGYNRSAKKCKEKFENVDKYYKRTKESRAGR--NDGKTYRFFTQLEA 251
                                   7899******************************97..56668*******85 PP
2trihelix108.35e-34538623187
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                                   rW+k ev+aLi++r+++++r++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e s+tcpy
  Zpz_sc04618.1.g00020.1.am.mk 538 RWPKAEVHALIQLRSNLDTRYQDAGPKGPLWEEISAGMRRLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEGSKTCPY 617
                                   8*********************************************************************8.99999**** PP

                      trihelix  82 fdqlea 87 
                                   f+ql+a
  Zpz_sc04618.1.g00020.1.am.mk 618 FHQLDA 623
                                   ****85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-10200252No hitNo description
PROSITE profilePS500907.166531595IPR017877Myb-like domain
SMARTSM007170.0051535597IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-4536594IPR009057Homeodomain-like
PfamPF138379.4E-24537624No hitNo description
CDDcd122032.70E-30538602No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MFYTSIVLEK ETHYSCYKLG LSLLSSCPCL HLFHLPRPHV LIIASPPFPS GNTGLRARVR  60
VAGSGVSMQQ QQQHGGGGRA GGGGGGAAQQ FGAQQVEMPP PPFSPAGQRI SAAEAPSPIS  120
SRPPPVAAAG DAGAAQDPAR HGRRLPGRHP QRSALGAGLQ VTEFCATTHS PCHRHSPATV  180
AVEFSSAERC MKSRRPPGPV REKLAEQGYN RSAKKCKEKF ENVDKYYKRT KESRAGRNDG  240
KTYRFFTQLE ALHATGSPAS AAPSPVTSFA PPSTTVGVSG PLPVRAPAEP PPSVSAGAGA  300
GMLPTMGNVS FSTSNTEDYS DDDDSDDEGT QELGGGADER GKRKRLSEGA AAAGGSGGGK  360
MMRFFEGLMK QVLERQEVMQ QRFLEAIEKR EQDRMIREEA WRRQEMARLA REQEILAQER  420
AMAASRDAAV LSFIQKITGQ TIPMPSIAAP AFNVMPPPAS HPPPQPHPMP AVSAPPAPPS  480
ASHTPPPQPK PSPQPQKSPA PATPTQQQPS DIVMMPADAP HADTPGHDGS GGGASSSRWP  540
KAEVHALIQL RSNLDTRYQD AGPKGPLWEE ISAGMRRLGY NRNAKRCKEK WENINKYFKK  600
VKESNKKRPE GSKTCPYFHQ LDALYRNKAL SSSGRGAAVH AHASSAPQET VKVTAAAAIS  660
QTPPPPSQPS QSSQHAAKTG KGKGGSAASE HGSSGSTNGS VAGAKKTEDM MKETMEHRQP  720
EPQQVASRID GAGSDSMDED DDYDDDEDDD DVDGNKMQYE IQFQHQQPQH HQQHQNVVRP  780
NAGGGNPPST AAPSTTATTT GSFMGLVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17684GGRAGGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04618.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612051e-137BT061205.1 Zea mays full-length cDNA clone ZM_BFb0123A12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794483.10.0trihelix transcription factor GTL1-like isoform X1
RefseqXP_025794484.10.0trihelix transcription factor GTL1-like isoform X1
TrEMBLA0A2S3IKR80.0A0A2S3IKR8_9POAL; Uncharacterized protein
STRINGGRMZM2G414159_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-49Trihelix family protein