PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04707.1.g00040.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 256aa    MW: 28070 Da    PI: 7.993
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04707.1.g00040.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP51.62.6e-1634684377
                                  -TTTSSEEETTT--SS--S-STTTT-------S-- CS
                           SBP 43 CqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
                                  C   +rfh l+efDe+krsCr+rLa+hn+rrrk++
  Zpz_sc04707.1.g00040.1.sm.mk 34 CIDRGRFHVLTEFDEAKRSCRKRLAEHNRRRRKPA 68
                                  66779****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.956167IPR004333Transcription factor, SBP-box
PfamPF031105.0E-93466IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.22E-123471IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.9E-53454IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MADELLALAD SRSWLPRSGA RTGRISLPAL PYPCIDRGRF HVLTEFDEAK RSCRKRLAEH  60
NRRRRKPATT AVSSKDGGEP TAKKPNTGAI TSSPHEHAQT DRVVEHQQRD QLLGSGQAGE  120
ADTDPRRGPD LMSTRKPTVS SNTSSVISCL DQGKQARPTL TLGAAQVDKD HQQQQQQLST  180
MLQVQPSADH QEQHFLTSLQ VHHHHQNSSS NNNNILSCSS VCSSALPPAA NGELSDQTNN  240
SNNGNGNMHL FEMDFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14966KRSCRKRLAEHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04707.1.g00040.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965676.17e-65squamosa promoter-binding-like protein 10
TrEMBLK3XXA12e-63K3XXA1_SETIT; Uncharacterized protein
STRINGSi006559m3e-64(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.14e-13squamosa promoter binding protein-like 8