PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc04990.1.g00010.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 1102aa MW: 118252 Da PI: 8.266

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc04990.1.g00010.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.4	1.6e-17	47	96	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d + ++ r +lg+f taeeAa+a+++a+ l+g Zpz_sc04990.1.g00010.1.am.mk 47 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 96 799****.7*****32...35********************99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	2.68E-18	47	104	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	5.4E-27	47	104	IPR001471	AP2/ERF domain
Pfam	PF00847	3.8E-12	47	96	IPR001471	AP2/ERF domain
CDD	cd00018	5.00E-28	47	103	No hit	No description
PROSITE profile	PS51032	19.836	47	104	IPR001471	AP2/ERF domain
SMART	SM00380	1.2E-33	47	110	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-6	48	59	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-6	70	86	IPR001471	AP2/ERF domain
Pfam	PF05910	4.3E-88	832	1099	IPR008586	Protein of unknown function DUF868, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1102 aa Download sequence Send to blast
MELQFQKPQS HAQQQQCQYQ AVSVVAKETA GKLSRARSKC GGGGGGKFVG VRQRPSGRWV 60 AEIKDTTQKI RMWLGTFETA EEAARAYDEA ACLLRGANTR TNFAAAGGAG SAPPVSPLAS 120 RIRALLHHKK LKKTVARQPD VAFSPPAAAA YRHGGGTGSV AATSTSASTV TTTTSSVSPS 180 SSPSSTTIKF AMTSGGIRTP ILPVPSHHTF TEESACYRPY LLTTGSDEFQ HQYEQSWTLN 240 TSSLPPTDGR DNACSRMPEL EKISPEKDGP ASPPHGEDRV QGGQDFFDAG NDASDSLVRT 300 FWVRFDLLDC SCRGANSVQK CMRKGEQQSR SPAVIAADQR AIAMATAGVS SAAERQRPSC 360 KEEVVQLSRL LGDSPSILAL QRFSSAMDRR VAPSMDAGQD VWVWEVLLPD DHTSSSTMCL 420 LDTTNLSDDR ETKEPMMITP PSSDTDVRDE PVDEFKDIGV VLDESTEPSE EAALPEATDL 480 AAASDGDEGE KPFQSADTKK PDEVADPSAA SDGKEEEKQF QSRDTKESVD DGEFEGEEDD 540 AIKNKKGNGQ ERPECAVFSV GKLKVNGIGA LCSFGVAAAT VCVFLIGGQL HHHHRHQQQQ 600 RQKIQLQFFG DDDKTKTVKP QYDCTTRRMH RNLLALAPRA CRGCRFSLSK PDSSRAALPL 660 PLHYHHCAAS ALHGRGLASP PHSDGSSVPF LRPWLCLRGE ARLASGARAP ARGCSFPVLR 720 RGALRLLCTT RWLGSCRAWP GAGGGSAGPG RGSVRGARLV GARRGPCTDP EHAALHAKCS 780 SKGAVGMMTM RDLACSGKSS VQIADAASSS SSSTGAGAGG VRGKGGGGAA SARSLVTCLY 840 RARLAGRACI VSVTWRRSRG GLVGQAVLGV ALEDAASGAR LCKADVKPWL FSQHKGSKRL 900 DVAGARGGTV EVFWDLSGAK FGPGPEPLEG FYVAVVCDQE MVLLLGDMRK EAYRKTGAGR 960 PVTDTFIVAR REHIAGKKVY SAKAQFGDGG KCHDIEIECD PTAGVKDMCL EIRIDTKLVM 1020 RVKRLAWKFR GNQTILVDGL PVEVFWDVHG WLFSSTTSNA VFMFQTCQVP EKSMPRLYSQ 1080 IFEEPQVQGP GFSLILHAWN VE

Sequence ? help Back to Top

Protein Sequence Length: 1102 aa Download sequence Send to blast

MELQFQKPQS HAQQQQCQYQ AVSVVAKETA GKLSRARSKC GGGGGGKFVG VRQRPSGRWV  60
AEIKDTTQKI RMWLGTFETA EEAARAYDEA ACLLRGANTR TNFAAAGGAG SAPPVSPLAS  120
RIRALLHHKK LKKTVARQPD VAFSPPAAAA YRHGGGTGSV AATSTSASTV TTTTSSVSPS  180
SSPSSTTIKF AMTSGGIRTP ILPVPSHHTF TEESACYRPY LLTTGSDEFQ HQYEQSWTLN  240
TSSLPPTDGR DNACSRMPEL EKISPEKDGP ASPPHGEDRV QGGQDFFDAG NDASDSLVRT  300
FWVRFDLLDC SCRGANSVQK CMRKGEQQSR SPAVIAADQR AIAMATAGVS SAAERQRPSC  360
KEEVVQLSRL LGDSPSILAL QRFSSAMDRR VAPSMDAGQD VWVWEVLLPD DHTSSSTMCL  420
LDTTNLSDDR ETKEPMMITP PSSDTDVRDE PVDEFKDIGV VLDESTEPSE EAALPEATDL  480
AAASDGDEGE KPFQSADTKK PDEVADPSAA SDGKEEEKQF QSRDTKESVD DGEFEGEEDD  540
AIKNKKGNGQ ERPECAVFSV GKLKVNGIGA LCSFGVAAAT VCVFLIGGQL HHHHRHQQQQ  600
RQKIQLQFFG DDDKTKTVKP QYDCTTRRMH RNLLALAPRA CRGCRFSLSK PDSSRAALPL  660
PLHYHHCAAS ALHGRGLASP PHSDGSSVPF LRPWLCLRGE ARLASGARAP ARGCSFPVLR  720
RGALRLLCTT RWLGSCRAWP GAGGGSAGPG RGSVRGARLV GARRGPCTDP EHAALHAKCS  780
SKGAVGMMTM RDLACSGKSS VQIADAASSS SSSTGAGAGG VRGKGGGGAA SARSLVTCLY  840
RARLAGRACI VSVTWRRSRG GLVGQAVLGV ALEDAASGAR LCKADVKPWL FSQHKGSKRL  900
DVAGARGGTV EVFWDLSGAK FGPGPEPLEG FYVAVVCDQE MVLLLGDMRK EAYRKTGAGR  960
PVTDTFIVAR REHIAGKKVY SAKAQFGDGG KCHDIEIECD PTAGVKDMCL EIRIDTKLVM  1020
RVKRLAWKFR GNQTILVDGL PVEVFWDVHG WLFSSTTSNA VFMFQTCQVP EKSMPRLYSQ  1080
IFEEPQVQGP GFSLILHAWN VE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-13	46	103	13	71	Ethylene-responsive transcription factor ERF096

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc04990.1.g00010.1.am.mk

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004273	5e-57	AP004273.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0431A02.
GenBank	AP014963	5e-57	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	5e-57	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3900	32	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19790.1	1e-21	related to AP2 11