PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc05191.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 559aa    MW: 58822.1 Da    PI: 9.8931
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc05191.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.4e-05247348955
                                   HHHHHHHHHHHHHHHHCTSCCC..........................................................T CS
                           HLH   9 ErrRRdriNsafeeLrellPkas.......................................................kap 34 
                                    r RR+ri +++  L+el+P+a                                                        ++ 
  Zpz_sc05191.1.g00020.1.am.mk 247 TRLRRERIAERMKALQELVPNANkvgaraghiyphvglldrrrapsataragprpffllefppmsrarrlsrrttrgfNPF 327
                                   599******************888***************************************************999777 PP

                                   TS-STCHHHHHHHHHHHHHHH CS
                           HLH  35 skKlsKaeiLekAveYIksLq 55 
                                       +Ka++L + ++Y+k Lq
  Zpz_sc05191.1.g00020.1.am.mk 328 FSATDKATMLDEIIDYVKFLQ 348
                                   77789*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.131238347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0027244353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.26E-8248266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-9251267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.26E-8324357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-9329355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MAKTKASRLR RSRLTVYDPL KLIIIRSIPS SSVLFHSIQE GPACTLQLLP PPLVLTLASE  60
TLPAGGQAMQ PTAREMQAMA AAGQISLDDL RAAVGGAGGA HDEFLDQMLG AGLPQSAWPD  120
QSGGKAPEGM QQQQFGGLYD ESALLASRLR EHQISGGPAG AEEKRMVLQQ LADLRQGYHG  180
MLLPLSLGSG GSGGGVQALA ANSTGGEAGG VFTGSFAGSL QHHQQQQRFH PHTQVVLLAI  240
PTRQHVTRLR RERIAERMKA LQELVPNANK VGARAGHIYP HVGLLDRRRA PSATARAGPR  300
PFFLLEFPPM SRARRLSRRT TRGFNPFFSA TDKATMLDEI IDYVKFLQLQ VLSMSRLGGA  360
GAVAPLVADM SSENPRDVNE LFSATADGYC HAPTATAPRV PHAEMPLLPS RNHRLSLHLS  420
VHAQGRGSGG GAAPAAESEG LAATEQQVAK LMEEDMGTAM QYLQGKGLCL MPVSLASAIS  480
SATCHMRPGS LQAGLGAAAA HRMAAAMRLP PGMNSDAVPA SPSLSVLTAQ SAMPNGVGAD  540
GEASQQQQQA KDAASVSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247252RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc05191.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126174e-59CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799597.11e-108glycine, alanine and asparagine-rich protein-like
TrEMBLA0A2S3GZY81e-106A0A2S3GZY8_9POAL; Uncharacterized protein
STRINGPavir.Ba01914.1.p3e-61(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.13e-26LJRHL1-like 3