PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc05219.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 325aa    MW: 36185.6 Da    PI: 10.4391
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc05219.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.47.9e-30145244192
                                   EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                                   f+k  tpsdv+k++rlv+pk++ae+h          ++ +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++g
  Zpz_sc05219.1.g00010.1.am.mk 145 FDKMVTPSDVGKLNRLVIPKQHAEKHfplrlpasTVVECKGVLLCFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKG 225
                                   8999*************************9998866666999*************************************** PP

                                   --TT-EEEEEE-SSSEE.. CS
                            B3  74 LkegDfvvFkldgrsefel 92 
                                   L++gD v F+++   e++l
  Zpz_sc05219.1.g00010.1.am.mk 226 LRAGDAVGFYRSAAGEQQL 244
                                   **********776555545 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-65276IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.8E-41137260IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-29142249IPR015300DNA-binding pseudobarrel domain
CDDcd100177.44E-29143237No hitNo description
PfamPF023621.3E-26145246IPR003340B3 DNA binding domain
PROSITE profilePS5086313.578145250IPR003340B3 DNA binding domain
SMARTSM010194.0E-22145251IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGHANHISHT YTLHLTLTTT TTITIPIFNQ RTKLYASRLL RSKELLLQLA GADEAARAYD  60
VAAQRFRGRD AVTNFRPLGD SSDPDAAAEL RFLASRTKAE VVDMLRKHTY LDELAQNRRA  120
FAAVCPSKPP LPSKNPSASA REHLFDKMVT PSDVGKLNRL VIPKQHAEKH FPLRLPASTV  180
VECKGVLLCF EDAAGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKGLRAGD AVGFYRSAAG  240
EQQLYIDCKV RSTTRTSSST AGPVKAVRLF GVDLLTKPRP ASAAPPVQEE MTVAMKNKRP  300
GEFIITSSTP PHMFFKKQCV DFAPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-5314226311127DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc05219.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807648.11e-136AP2/ERF and B3 domain-containing protein Os05g0549800
SwissprotQ6L4H41e-115Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLA0A2T7EAR21e-136A0A2T7EAR2_9POAL; Uncharacterized protein
STRINGPavir.J13012.1.p1e-134(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-73related to ABI3/VP1 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]