PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc05265.1.g00010.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 455aa MW: 49771.9 Da PI: 9.9876

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc05265.1.g00010.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	51	4.1e-16	404	452	1	47
DUF260 1 aCaaCkvlrrkCakd..CvlapyfpaeqpkkfanvhklFGasnvlkllk 47 +CaaC++lrr+C + Cvlapyfpa++p+++a vh +FG+sn ++l++ Zpz_sc05265.1.g00010.1.am.mk 404 RCAACRYLRRRCDPAggCVLAPYFPASRPRRYADVHAVFGTSNATRLIQ 452 6*********99777**************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.8	403	455	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.2E-15	404	452	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
CQSFELTELS VESIHPRRGL SNFYTGKSKS FTSLAEAAAK AAAKEIAKPE NPFNKRRRVL 60 AAWSRRRASC SALATAYLPP LLAPDHAVLE EDDEEGADDS DDEDKGRRER RHPPAFPSPR 120 LSVHAQLSRS ADAGSFRSRH PSFPQKEDRP IENSSDDEPA IRWQQRVATY KQFTERSVVA 180 GNACYERGRG SSSRRGAIAF LHIDGGATEG RPVNLELLGS RLQLRIPLPA LSRQRRPTPS 240 KGPAEDPAAS PLWPLALDRS TAPWRSARGG GRAVWLPPQT RPLVPPSTTT KPQSGCCLGR 300 HAPCHLADTA CLSLKERERV CALPRDFACI DEGGHAHAHT KKRGSSTNRV SGEEDRSSKV 360 QEERTTTMNR IKTLLWSVTE KTARTSAGNT ELELGSGGSS GSGRCAACRY LRRRCDPAGG 420 CVLAPYFPAS RPRRYADVHA VFGTSNATRL IQVVC

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

CQSFELTELS VESIHPRRGL SNFYTGKSKS FTSLAEAAAK AAAKEIAKPE NPFNKRRRVL  60
AAWSRRRASC SALATAYLPP LLAPDHAVLE EDDEEGADDS DDEDKGRRER RHPPAFPSPR  120
LSVHAQLSRS ADAGSFRSRH PSFPQKEDRP IENSSDDEPA IRWQQRVATY KQFTERSVVA  180
GNACYERGRG SSSRRGAIAF LHIDGGATEG RPVNLELLGS RLQLRIPLPA LSRQRRPTPS  240
KGPAEDPAAS PLWPLALDRS TAPWRSARGG GRAVWLPPQT RPLVPPSTTT KPQSGCCLGR  300
HAPCHLADTA CLSLKERERV CALPRDFACI DEGGHAHAHT KKRGSSTNRV SGEEDRSSKV  360
QEERTTTMNR IKTLLWSVTE KTARTSAGNT ELELGSGGSS GSGRCAACRY LRRRCDPAGG  420
CVLAPYFPAS RPRRYADVHA VFGTSNATRL IQVVC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	54	58	KRRRV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc05265.1.g00010.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU947570	2e-88	EU947570.1 Zea mays clone 347505 mRNA sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	3e-08	LOB domain-containing protein 4