PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc05446.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 404aa    MW: 43761.9 Da    PI: 11.7969
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc05446.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix29.52e-09219280166
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                                   +Wt +e+laL++a++ +  +++r+ l  ++W++v+++      ++++ qC++k e+l++r +  ++
  Zpz_sc05446.1.g00020.1.am.mk 219 CWTPDETLALVRAYTARRLAVGREHLTSADWAAVAAAAP----SKTARQCRHKVEKLRRRLRSSRR 280
                                   8*********************************99865....689*************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-7218280No hitNo description
PROSITE profilePS500906.516220272IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-4220271IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
LARSGRDTPP LRPAFNAAER AQPALLSVLS TVQAKASPPP DVLPTAPRGR PDLASALCPA  60
DALARYISRV GVGAPSSLHG TNTPPPTTRA AVPRPHATSY TGSRVPPIAA SRNSHDVTTA  120
EGGYGNEKYC RKEKRKTRTT AKVYGFHGWR RAGVGQGAHA PRLAPPPPPQ PAARMRPPPS  180
QHAVLRHRLT TTTTTTTTMA SPSASPRANG SGRRVPPPCW TPDETLALVR AYTARRLAVG  240
REHLTSADWA AVAAAAPSKT ARQCRHKVEK LRRRLRSSRR RPCPLLDAID LLDGPSPPIM  300
SRVQSPSPSR SPSPPPAVSL PSPYSSPASP PRKRRRDDYG DEYGVSDLVG ALRVIGEGFL  360
RAEERRMEAA RETQRMRMDM ALRHLDAQRR LMEVFVGRIV DALD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269275KLRRRLR
2270276LRRRLRS
3331335RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc05446.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001144478.17e-84uncharacterized protein LOC100277445
TrEMBLB6TUK02e-82B6TUK0_MAIZE; FRIGIDA interacting protein 2
STRINGGRMZM2G320827_P013e-83(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139112024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.14e-07Trihelix family protein