PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc05518.1.g00010.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 94aa MW: 10047.6 Da PI: 9.5351

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc05518.1.g00010.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	56.3	9.6e-18	45	90	1	46
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkll 46 +CaaCk+lrr+Ca++C+++ yf +p+kfa+vhk+FGasnv+k+l Zpz_sc05518.1.g00010.1.am.mk 45 PCAACKLLRRRCAQECPFSLYFSPLEPHKFAAVHKVFGASNVSKML 90 7*******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.331	44	94	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-17	45	90	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
MSTASHWQDH EVGRKIKRES AAAAADRMTA AAAAGAGSAL NTITPCAACK LLRRRCAQEC 60 PFSLYFSPLE PHKFAAVHKV FGASNVSKML LVCN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-17	30	90	2	56	LOB family transfactor Ramosa2.1
5ly0_B	9e-17	30	90	2	56	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc05518.1.g00010.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC134341	4e-64	AC134341.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0027N19, complete sequence.
GenBank	AP014961	4e-64	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	4e-64	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004977134.1	1e-45	LOB domain-containing protein 15
Swissprot	Q8L5T5	4e-33	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A368S0C8	2e-44	A0A368S0C8_SETIT; Uncharacterized protein
STRING	TRIUR3_18328-P1	6e-43	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-32	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]