PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc05831.1.g00010.1.es.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 300aa MW: 33429.9 Da PI: 6.4251

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc05831.1.g00010.1.es.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77	3.7e-24	86	176	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngei.tkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkw 76 +fYneYA+ +GF r+ +s++sk ++e+ ++++fvCs+eg ++++ + + +++r+r++ r gC+a+++v +e +++w Zpz_sc05831.1.g00010.1.es.mkhc 86 EFYNEYARWLGFPFRVGRSRRSKGTEEVlVMKRFVCSREGMYKKKQPSsdDATRKRERVSMRDGCNAMMEVVRE-SDHW 163 6*******************8777652789****98887766557888999***********99.9* PP FAR1 77 evtkleleHnHel 89 +v+kle+ HnH l Zpz_sc05831.1.g00010.1.es.mkhc 164 VVSKLEKAHNHGL 176 ***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-21	86	176	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.3E-7	269	299	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MIMEGARSEG DELIADYVDC LMSLDTSARS HQNDSIVLGD SIVEGAPSLS VGGAAEPEVM 60 KDFALGDDPN EPVLGMVFES DEAAKEFYNE YARWLGFPFR VGRSRRSKGT EEVLVMKRFV 120 CSREGMYKKK QPSSDDATRK RERVSMRDGC NAMMEVVRES DHWVVSKLEK AHNHGLGTCT 180 KVGYLRARGL LVSSEKVTMV GPDDMSFLRH NVLGEGGDAQ GLLDYLKKMQ ANDPAFFHAI 240 QVDKNGCVVN AFWADARAKA AYRHFGDAVT FDTTYKKNKY MMPFVTFTGV NHHLQPVIFG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc05831.1.g00010.1.es.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012700148.1	1e-179	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_012700149.1	1e-179	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_012700150.1	1e-179	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A368QD21	1e-178	A0A368QD21_SETIT; Uncharacterized protein
TrEMBL	A0A453JX23	1e-178	A0A453JX23_AEGTS; Uncharacterized protein
STRING	Pavir.Cb01881.1.p	1e-179	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-48	FAR1-related sequence 5