PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc06143.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 210aa    MW: 22349.9 Da    PI: 6.503
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc06143.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.11.6e-272988258
                                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                          WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58
                                  dDgy+WrKYGqK++ gs++prsYYrCt++   gC++kkkv+r ++dp + e+tY g+H++
  Zpz_sc06143.1.g00010.1.am.mk 29 DDGYTWRKYGQKDILGSRYPRSYYRCTHKnfyGCEAKKKVQRLDDDPFTYEVTYCGNHTC 88
                                  8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-272588IPR003657WRKY domain
SuperFamilySSF1182909.68E-252788IPR003657WRKY domain
SMARTSM007744.8E-372890IPR003657WRKY domain
PfamPF031069.5E-262988IPR003657WRKY domain
PROSITE profilePS5081121.4942986IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MNFRRESGER LTVFVPVQRA GGNMDQPPDD GYTWRKYGQK DILGSRYPRS YYRCTHKNFY  60
GCEAKKKVQR LDDDPFTYEV TYCGNHTCLT STTPLLTLPA TAGTRADTVA ANSPTSSAAI  120
LAHPDITMAA AEHHPAPALS TSIQLGMTWM PSSLVGASST SAGAGEGSGA QAHVPTAAGT  180
GRDVEYPLMD LTDAIFNSGS SGGSSMDAIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-232988968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc06143.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2878173e-91AK287817.1 Oryza sativa Japonica Group cDNA, clone: J065181J09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439531.22e-97probable WRKY transcription factor 17
TrEMBLA0A1Z5R1R15e-96A0A1Z5R1R1_SORBI; Uncharacterized protein
STRINGSi025307m1e-88(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-36WRKY DNA-binding protein 55