PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc06147.1.g00010.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 98aa    MW: 11181.8 Da    PI: 7.5961
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc06147.1.g00010.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.51.6e-202098194
                           NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83
                                  lp Gf FhP+dee++++yL +k+ ++++++  +i+e+        ++      + kewyf++++ +ky++g r nrat++g+W
  Zpz_sc06147.1.g00010.1.sm.mk 20 LPLGFGFHPSDEEIITFYLMPKMLDSNITA-VAIAEA--------KM------GGKEWYFYCQKVHKYQKGVRINRATSAGFW 87
                                  699**********************99777.335542........33......679*************************** PP

                           NAM 84 katgkdkevls 94
                                  katgkdke+++
  Zpz_sc06147.1.g00010.1.sm.mk 88 KATGKDKEIYQ 98
                                  ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-261797IPR003441NAC domain
PROSITE profilePS5100516.6262098IPR003441NAC domain
PfamPF023651.1E-122194IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MEDHKYEGIR GTIDDAGLNL PLGFGFHPSD EEIITFYLMP KMLDSNITAV AIAEAKMGGK  60
EWYFYCQKVH KYQKGVRINR ATSAGFWKAT GKDKEIYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-188962105Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
UniProtTranscription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc06147.1.g00010.1.sm.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}.
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420240.23e-32PREDICTED: NAC domain-containing protein 79
SwissprotQ9FLJ24e-29NC100_ARATH; NAC domain-containing protein 100
SwissprotQ9LJW33e-29NAC59_ARATH; NAC domain-containing protein 59
TrEMBLA0A218WPM84e-30A0A218WPM8_PUNGR; Uncharacterized protein
TrEMBLA0A2I0JCX28e-31A0A2I0JCX2_PUNGR; Uncharacterized protein
TrEMBLA0A2P5CS998e-30A0A2P5CS99_PARAD; NAC domain containing protein
TrEMBLG7KQ487e-30G7KQ48_MEDTR; NAC transcription factor-like protein
STRINGAES752211e-30(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4777123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29035.11e-31NAC domain containing protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Manacorda CA, et al.
    Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes.
    Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98
    [PMID:23945002]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]