PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc06206.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bZIP
Protein Properties Length: 298aa    MW: 32718.2 Da    PI: 10.0129
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc06206.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.69.6e-12135176445
                                   XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                        bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                                    k++rr+++NReAAr+sR RKka+ie+Le   ++L    ++L
  Zpz_sc06206.1.g00020.1.am.mk 135 HKVQRRLAQNREAARKSRIRKKAYIEQLESGRAKLAHLEQEL 176
                                   699**************************8777776655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.5E-9128178No hitNo description
SMARTSM003382.0E-6132220IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.197134178IPR004827Basic-leucine zipper domain
PfamPF001708.0E-9135176IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.17E-7136179No hitNo description
PROSITE patternPS000360139154IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MPACVFSRFL ARALAWTDAM WCEGPNPSSK SSSSLTAATF APPVATAYGG VAASLGMAAT  60
GTVITDAGRF CPPWTQFENW GDSGVVVTSP LTETTSTDVD DSGDKRNAQM GGSSAQRVAV  120
NVDPSVVSKE RQGDHKVQRR LAQNREAARK SRIRKKAYIE QLESGRAKLA HLEQELQRAR  180
QQGMFIASGC SGALAFDMEY ARWLDEHQRH INDLRVALAA QMGDGDLRVL VDAMAMAMAK  240
LGALENFLRQ ADLLRQQTLE QMRRILSTRQ SARALLVISD YFSRLRALSS LWLARPRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc06206.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097198e-56AK109719.1 Oryza sativa Japonica Group cDNA clone:002-146-A04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660509.26e-85transcription factor TGAL3
SwissprotQ5Z6N91e-64TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBLA0A3L6PD603e-89A0A3L6PD60_PANMI; Transcription factor HBP-1b(C38)-like
STRINGPavir.J20659.1.p3e-78(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.24e-41TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]