PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc06353.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 226aa    MW: 25172.3 Da    PI: 6.6904
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc06353.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.81.9e-1849137197
                                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                                   ffkv+ p+ +++   l +p +f e  ++ ++  + ++l+ +sg sW+v l  + +s++ v+t+GWkeF++++ L  g f++
  Zpz_sc06353.1.g00010.1.am.mk  49 FFKVFFPEQSGEG--LKIPSPFHEYVEEAPN--RVVSLRGPSGHSWRVVL--TTGSQGLVFTQGWKEFARDHSLIPGHFLL 123
                                   8999988887765..9******954465544..48***************..***************************** PP

                                   EEE-SSSEE..EEEEE CS
                            B3  82 Fkldgrsefelvvkvf 97 
                                   F++dg sef   v vf
  Zpz_sc06353.1.g00010.1.am.mk 124 FTYDGCSEF--SVAVF 137
                                   ***986776..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.8E-2247139IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-2048138IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-1349143IPR003340B3 DNA binding domain
PfamPF023621.4E-1549136IPR003340B3 DNA binding domain
CDDcd100171.45E-1749137No hitNo description
PROSITE profilePS5086312.95762140IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MRNGMGKEKE KQVEKGRDRR KEKQSGKEQR KEIAREVQDD VPVAAGEQFF KVFFPEQSGE  60
GLKIPSPFHE YVEEAPNRVV SLRGPSGHSW RVVLTTGSQG LVFTQGWKEF ARDHSLIPGH  120
FLLFTYDGCS EFSVAVFTPL GVEDKAALKV QPCKELLVKQ EEEEGTLDVA ADGTLEASDT  180
PFVEGNGATT GKRVRDMDYE MTSGTAQKRH SSVQEKPKKK KPEATA
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc06353.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827675.15e-57B3 domain-containing protein Os11g0197600-like
RefseqXP_025827676.15e-57B3 domain-containing protein Os11g0197600-like
TrEMBLA0A0A9DCS33e-60A0A0A9DCS3_ARUDO; Uncharacterized protein
STRINGPavir.J06349.1.p4e-55(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-17B3 family protein