PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc06462.1.g00010.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 140aa    MW: 15550 Da    PI: 9.7857
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc06462.1.g00010.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.52e-072411255
                                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                  RR++i +++  L++l+P++    sk   Ka +L + ++Y++sLq
  Zpz_sc06462.1.g00010.1.sm.mk  2 RREKISERMKLLQDLVPSC----SKVTGKAVMLDEIINYVQSLQ 41
                                  9*****************9....566*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003533.1E-4146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.659140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-8245No hitNo description
PfamPF000101.4E-4241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-11248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-12347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
LRREKISERM KLLQDLVPSC SKVTGKAVML DEIINYVQSL QRQVEILRFP GVPSSSFGFS  60
PDMMHPQLQL SQPGLMQGGA AGMANPDVFR RIMQAQLNAK DRSQMAHAMN GSFSDVTQMA  120
YPSLGSQDLS MRPSQNGFQM
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc06462.1.g00010.1.sm.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1214185e-40AK121418.1 Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence.
GenBankHQ8588635e-40HQ858863.1 Oryza sativa Japonica Group isolate UT1672 bHLH- transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308861.13e-80transcription factor bHLH49 isoform X1
RefseqXP_021308862.13e-80transcription factor bHLH49 isoform X2
TrEMBLJ3MYF46e-80J3MYF4_ORYBR; Uncharacterized protein
STRINGOB09G20330.11e-80(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.38e-24bHLH family protein