PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc06723.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 238aa    MW: 25669.3 Da    PI: 7.2193
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc06723.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-071222446
                                  HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46
                                  W+ Ia+ ++ gRt++++k++w++
  Zpz_sc06723.1.g00010.1.am.mk  1 WSIIAAQLP-GRTDNDIKNYWNT 22
                                  99*******.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001671.35E-5124No hitNo description
SuperFamilySSF466892.12E-6129IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-10128IPR009057Homeodomain-like
PROSITE profilePS5129416.703128IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
WSIIAAQLPG RTDNDIKNYW NTKLKKKLML AHGLQPPTTT NTNSHHHRPK KQQQLFFSAQ  60
AEAPSSATQP PGEPLSLQYL STPFHNFSYH YGSRCYDSNT PTSHHSAGSG GSLLMLGGSN  120
DEQHMISSPC FPNYGSLHGH DSAAVAASLA MESFVFQDDH HKALQVLLAS GTASLDHQNG  180
TNMSCGYEET AKPLLVNVTA GGGGSNWVSN SFFCSYSEEK SSSSPNAAGV SRQGSFMY
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc06723.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-13myb domain protein 36