PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc06910.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 256aa    MW: 26984.4 Da    PI: 9.4691
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc06910.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP102.47.8e-3211102102
                           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec.... 73 
                                   ag+kdrhsk+ T++g+RdRRvRls+++a+rf+d+qd+LG+d++sk++ WL+ +a +ai++l+++                 
  Zpz_sc06910.1.g00010.1.am.mk   1 AGGKDRHSKVVTARGLRDRRVRLSVPTAIRFYDVQDRLGVDQPSKAVAWLIGAAAAAIDALPSLdrssfA------Lppav 75 
                                   689*************************************************************544431......12333 PP

                           TCP  74 .eaesssssasnsssg.....kaaksaakskksqk 102
                                    +a++++s++++s+ +     +a +++a +  +++
  Zpz_sc06910.1.g00010.1.am.mk  76 aDAGAEVSASETSKGSvlslvNAPAETAVPAAAHQ 110
                                   33333333333333335555422222221111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.1E-312111IPR005333Transcription factor, TCP
PROSITE profilePS5136930.594361IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
AGGKDRHSKV VTARGLRDRR VRLSVPTAIR FYDVQDRLGV DQPSKAVAWL IGAAAAAIDA  60
LPSLDRSSFA LPPAVADAGA EVSASETSKG SVLSLVNAPA ETAVPAAAHQ TNHAVHAYSG  120
NAGGGGAFAQ PLHCDATDDD KSMRQKGPPT LAYYAAQTRS PYITPARDLG TMPQLAFLHE  180
EQQQQPAVVF GRAILQSNAV AAPLWPPAQQ HPCLLQRFTS ADAAGLPFFL GGGAAPVTSS  240
ADRRVQFWNF KQERKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-20862155Putative transcription factor PCF6
5zkt_B4e-20862155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc06910.1.g00010.1.am.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1012151e-60FP101215.1 Phyllostachys edulis cDNA clone: bphylf044o06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963209.12e-92transcription factor PCF8
SwissprotA2ZMR93e-64PCF8_ORYSI; Transcription factor PCF8
TrEMBLA0A3L6T2896e-93A0A3L6T289_PANMI; Transcription factor PCF8
STRINGPavir.Ca02949.1.p8e-96(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.23e-20TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2