PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc07121.1.g00010.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 87aa MW: 9810.91 Da PI: 10.5519

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc07121.1.g00010.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.1	4e-08	2	37	12	47
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ + +++G+g+W++I+r + Rt+ q+ s+ qky Zpz_sc07121.1.g00010.1.sm.mk 2 FLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 37 777899*************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.11	1	42	IPR017930	Myb domain
CDD	cd00167	6.56E-6	1	38	No hit	No description
SuperFamily	SSF46689	2.22E-10	1	43	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-6	2	37	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	1.1E-11	2	40	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.3E-6	2	37	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
LFLLGLEKYG KGDWRSISRN FVISRTPTQV ASHAQKYFIR LNSMNRERRR QSIHDITSVN 60 NGDASAAQGP ITGSANVTGW TEKSDDW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc07121.1.g00010.1.sm.mk

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HF679443	3e-71	HF679443.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB37 protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823483.1	4e-46	transcription factor SRM1
Swissprot	Q9FNN6	1e-40	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A3L6PSD7	6e-45	A0A3L6PSD7_PANMI; Uncharacterized protein
TrEMBL	A0A3L6QCW8	7e-45	A0A3L6QCW8_PANMI; Uncharacterized protein
TrEMBL	I1PI25	1e-45	I1PI25_ORYGL; Uncharacterized protein
STRING	Pavir.Gb00055.1.p	1e-45	(Panicum virgatum)
STRING	OPUNC04G27130.1	2e-45	(Oryza punctata)
STRING	ORGLA03G0402100.1	2e-46	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9466	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	6e-43	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]