PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc07635.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 239aa    MW: 24837.4 Da    PI: 7.4554
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc07635.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-051738223
                                  EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                                  +C+ C+++F ++  L  H+r+H
  Zpz_sc07635.1.g00010.1.am.mk 17 TCKLCSRRFASPRALAGHMRSH 38
                                  6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.00781638IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6811639IPR007087Zinc finger, C2H2
SuperFamilySSF576672.85E-71738No hitNo description
PfamPF139128.1E-51838IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
SuperFamilySSF576672.85E-7205229No hitNo description
SMARTSM0035555210230IPR015880Zinc finger, C2H2-like
PfamPF139127.6E-10210234IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
PRALPEGLSS LAMAKNTCKL CSRRFASPRA LAGHMRSHSL AASAAAAAAA AAEAAAAKQQ  60
ISSASSASTS FTTADDEDVG FKKPASIHAL RENPKRSLRA ADGSSFSSDR ESEAESTQPP  120
AKRASPPAAW GEADPVSSLS EAATPEEDVA LSLMKLSRDS WPSASRVEEA DYAEDDDSDD  180
DGYVAPPAPT PPRRLAAPAP APVAEKRTQF QCTACKKVFR SYQALGGHRA SNVRGGRGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc07635.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020393363.15e-78zinc finger protein ZAT1
TrEMBLA0A1D6HF461e-76A0A1D6HF46_MAIZE; Zinc finger protein ZAT9
TrEMBLA0A3L6EMC61e-76A0A3L6EMC6_MAIZE; Zinc finger protein ZAT1
STRINGPavir.Ab02618.1.p2e-75(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.12e-12C2H2-like zinc finger protein