PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc08676.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 112aa    MW: 11958.2 Da    PI: 10.4735
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc08676.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.29.4e-0694112220
                                   HHHHHHHHHHHHHHHHHHH CS
                           HLH   2 rrahnerErrRRdriNsaf 20 
                                   r +h++ E+rRR++iN+++
  Zpz_sc08676.1.g00010.1.am.mk  94 RSKHSATEQRRRSKINDRL 112
                                   899**************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.9E-591112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.79792112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
HPWALPFAAA RCVAVAPARP QQQQQMPLDR KVGGGFTEAG SRSSGSGGFD DDDGHAARRE  60
VSSSLKELTV RVEETKGGSC SGSAGTDKLP NTPRSKHSAT EQRRRSKIND RL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc08676.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235247.12e-40transcription factor BIM2 isoform X2
TrEMBLA0A2T7D8X52e-45A0A2T7D8X5_9POAL; Uncharacterized protein
TrEMBLA0A3L6RH253e-45A0A3L6RH25_PANMI; Transcription factor BIM1-like
STRINGBRADI3G38970.13e-39(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.15e-09bHLH family protein