PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc08926.1.g00010.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 191aa    MW: 20433.5 Da    PI: 7.1643
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc08926.1.g00010.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.71.4e-3111017100
                        DUF260   7 vlrrkCakdCvlapyf....paeqp......kkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGav 77 
                                   +lrr+C+++Cv+ap+f        +      ++fa+vhk+FGasnv k+l+++p   r+da+++++yeA+ar+ dPvyG+v
  Zpz_sc08926.1.g00010.1.sm.mk   1 FLRRRCVPGCVFAPHFggtrE---HgggagaAQFAAVHKVFGASNVAKMLSRVPAALRRDAARTVCYEAQARVGDPVYGCV 78 
                                   69**************66541...13444559************************************************* PP

                        DUF260  78 gvilklqqqleqlkaelallkee 100
                                   g+il+lq+q++ ++ el+++++e
  Zpz_sc08926.1.g00010.1.sm.mk  79 GTILALQHQVALVQGELSSVQTE 101
                                   ******************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.5051102IPR004883Lateral organ boundaries, LOB
PfamPF031958.4E-35199IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
FLRRRCVPGC VFAPHFGGTR EHGGGAGAAQ FAAVHKVFGA SNVAKMLSRV PAALRRDAAR  60
TVCYEAQARV GDPVYGCVGT ILALQHQVAL VQGELSSVQT ELLNRRLALA TVHPSLPSAS  120
PTSQMLNCGA VPQTVDFIDI DHSLRGLPPP LVPMQQPQQE EEKDEGSPIV DVFVRLLLLT  180
LNHNETGGLE L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-31110317112LOB family transfactor Ramosa2.1
5ly0_B5e-31110317112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc08926.1.g00010.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970122.12e-88LOB domain-containing protein 4
SwissprotQ9SRV32e-43LBD20_ARATH; LOB domain-containing protein 20
TrEMBLK3XQV34e-87K3XQV3_SETIT; Uncharacterized protein
STRINGSi004290m7e-88(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140852526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-39LOB domain-containing protein 20