PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc09888.1.g00010.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 172aa MW: 19647.3 Da PI: 8.9782

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc09888.1.g00010.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.5	8.6e-22	27	82	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ ++t++q+++Le+lF++ ++p++++r+eL+k+lgL+ rq+k+WFqNrR+++k Zpz_sc09888.1.g00010.1.am.mk 27 KKRYNRHTPHQIQQLEALFKQYPHPDEKQRAELSKRLGLEPRQIKFWFQNRRTQMK 82 5677899**********************************************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.6E-22	9	84	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-24	10	78	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.398	24	84	IPR001356	Homeobox domain
SMART	SM00389	1.8E-19	25	88	IPR001356	Homeobox domain
CDD	cd00086	4.35E-18	26	84	No hit	No description
Pfam	PF00046	2.9E-19	27	82	IPR001356	Homeobox domain
PRINTS	PR00031	8.2E-6	55	64	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	59	82	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.2E-6	64	80	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
ACDHADTVFS GGGSEDDADA GNPRKRKKRY NRHTPHQIQQ LEALFKQYPH PDEKQRAELS 60 KRLGLEPRQI KFWFQNRRTQ MKTQLERHEN ALLKQENDKL RAENQSVREA LTNLVCGNCG 120 GPAMLGEVSL EEHHLRLENA RLRDELTHVC ALAAKFIGKP ISPMAAPPQM HL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	22	28	PRKRKKR
2	23	27	RKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc09888.1.g00010.1.am.mk

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978185.1	6e-84	homeobox-leucine zipper protein ROC4
Swissprot	Q7Y0V9	5e-83	ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4
TrEMBL	A0A3L6QXY5	6e-83	A0A3L6QXY5_PANMI; Uncharacterized protein
TrEMBL	K3Y5A8	1e-82	K3Y5A8_SETIT; Uncharacterized protein
STRING	Pavir.Gb01032.1.p	4e-87	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14930	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.2	4e-73	HD-ZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wei J, et al. GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7. Plant Sci., 2016. 252: p. 133-143 [PMID:27717449] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]