PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc10855.1.g00010.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 123aa    MW: 13881.9 Da    PI: 10.8339
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc10855.1.g00010.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH247.1e-08244754
                                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                  +rEr+RR+++ ++++ L  l+  +      K +K +i++ A  YI++L
  Zpz_sc10855.1.g00010.1.sm.mk  2 MRERQRREKLSQSYADLYALVAAR-----SKGDKNSIVQSAAIYIHEL 44
                                  79*********************7.....6999999*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003537.0E-5150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.963144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-9262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.57E-5245No hitNo description
PfamPF000101.3E-5244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.83E-11266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MMRERQRREK LSQSYADLYA LVAARSKGDK NSIVQSAAIY IHELKGARAQ LHRRNEELKA  60
RILGHDARQP SVKVDFEVDD PASGIDSMIG ALRRLKSMGV KARGIRSNMT GGRLWTEMNI  120
ETT
Functional Description ? help Back to Top
Source Description
UniProtMay act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269|PubMed:21332845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc10855.1.g00010.1.sm.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269|PubMed:21332845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794972.14e-70transcription factor BHLH148-like
SwissprotQ75KV94e-68BH148_ORYSJ; Transcription factor BHLH148
TrEMBLA0A2S3II729e-69A0A2S3II72_9POAL; Uncharacterized protein
TrEMBLA0A3L6SG121e-68A0A3L6SG12_PANMI; Uncharacterized protein
STRINGPavir.Ia00623.1.p1e-69(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59403450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-21bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]