PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc11335.1.g00010.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 109aa MW: 11381 Da PI: 11.5522

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc11335.1.g00010.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.5	2.4e-08	28	83	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksL 54 +rr+ +e+Er RR+ + ++eL l+P + ++ + ++e+Av Y+ L Zpz_sc11335.1.g00010.1.am.mk 28 KRRKTPEIERARRRTMSGLYAELAALIPGvPArVSNDVQTTRTRVVEEAVAYVGAL 83 79999************************766777777799999999999998665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.09E-8	25	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.64E-6	25	80	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-8	27	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.592	27	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.4E-6	28	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-4	33	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
MVGGEAPVTP SLAAEGKRSP ATAAPSSKRR KTPEIERARR RTMSGLYAEL AALIPGVPAR 60 VSNDVQTTRT RVVEEAVAYV GALRAAAAEL EAQRVVAAGR SRVAARTDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	40	RRKTPEIERARRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc11335.1.g00010.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022682965.1	3e-14	uncharacterized protein LOC111257451
TrEMBL	A0A1E5V8M3	4e-14	A0A1E5V8M3_9POAL; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9141	19	31