PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00017-abinit-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ZF-HD
Protein Properties Length: 210aa    MW: 23126.8 Da    PI: 9.0131
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00017-abinit-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1023.9e-32358359
                                           ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                                                           +rY+eClkNhA+ +GghavDGCgEfm++ geegt +alkCaAC+CHRnFHR+ev++
  augustus_masked-scaffold00017-abinit-gene-0.6-mRNA-1  3 MTRYRECLKNHAVGMGGHAVDGCGEFMAA-GEEGTLDALKCAACNCHRNFHRKEVND 58
                                                          689*************************9.999*********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.6E-29456IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.6E-30556IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-23555IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.752655IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.35E-20134208IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-31137209IPR009057Homeodomain-like
TIGRFAMsTIGR015651.2E-25147203IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MMMTRYRECL KNHAVGMGGH AVDGCGEFMA AGEEGTLDAL KCAACNCHRN FHRKEVNDHH  60
HRPSSEVYHH YQQQFTPYYP HRSPQPPHHS GYLHITTTSS QHHQRPPLAL PAASGGGGGQ  120
DLEDMSNPSS SGGGGGGGGG GGGGGYKKRF RTKFSQEQKE KMLQFAESLG WRIQKHDEAA  180
VDQFCADTGV RRQVLKVWMH NNKHTLGKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-301482051875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023900904.11e-120zinc-finger homeodomain protein 2-like
SwissprotQ9SB612e-73ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A2N9IF855e-91A0A2N9IF85_FAGSY; Uncharacterized protein
STRINGXP_002514009.13e-84(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-74homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]