PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00022-abinit-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GATA
Protein Properties Length: 307aa    MW: 34316.8 Da    PI: 9.7862
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00022-abinit-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-19176209134
                                                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                                           C+ C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  augustus_masked-scaffold00022-abinit-gene-0.6-mRNA-1 176 CADCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 209
                                                           *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.52E-12170210No hitNo description
PROSITE profilePS5011412.598170206IPR000679Zinc finger, GATA-type
SMARTSM004015.3E-18170221IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-15174209IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.16E-13175207No hitNo description
PROSITE patternPS003440176201IPR000679Zinc finger, GATA-type
PfamPF003204.8E-17176209IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MTPPYHNSPP SPFPLELNQD QHHRLLISAT PQVSSSSSSF SNPIFFNPAQ DQGGCYYMAL  60
NHFQNDQEVD KLVAHGGSSC DHISLKNESD SENKFSFWDK ESKIEDQSET FSVKWMPSKM  120
RMMRKMINSE QTGHADIPLN SMKKFEDQKQ PMAPSKTDNS SNNSFNNNNY STVRVCADCN  180
TTKTPLWRSG PRGPKSLCNA CGIRQRKARR AMAAAAAAAN GTILAANPPS MKSTKVQHKD  240
KRASKSYVPK FKKKCNLNTP DHGRKKVCFE DFTISLSKNS AFQRVFPQDE KEAAILLMAL  300
SYGLVHG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023914096.10.0GATA transcription factor 21-like
TrEMBLA0A2N9EP631e-167A0A2N9EP63_FAGSY; Uncharacterized protein
STRINGXP_002514107.14e-95(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.18e-32cytokinin-responsive gata factor 1