PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold00032-abinit-gene-2.3-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

M-type_MADS

Protein Properties

Length: 69aa MW: 7853.19 Da PI: 10.669

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold00032-abinit-gene-2.3-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	103.1	9.9e-33	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gkly+y augustus_masked-scaffold00032-abinit-gene-2.3-mRNA-1 9 KRIENKINRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSRGKLYDY 57 79**********************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.8E-41	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	32.814	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.29E-38	2	63	No hit	No description
SuperFamily	SSF55455	4.06E-30	2	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-33	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.3E-28	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-33	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 69 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAHELSVLCD AEVALIIFSS RGKLYDYGNV 60 GYNILSLSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6bz1_A	2e-20	1	63	1	63	MEF2 CHIMERA
6bz1_B	2e-20	1	63	1	63	MEF2 CHIMERA
6bz1_C	2e-20	1	63	1	63	MEF2 CHIMERA
6bz1_D	2e-20	1	63	1	63	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269\|PubMed:19820190}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF373602	9e-43	AF373602.1 Vitis vinifera MADS-box protein 3 (MADS3) mRNA, complete cds.
GenBank	AM483035	9e-43	AM483035.2 Vitis vinifera contig VV78X094019.4, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023928494.1	8e-36	agamous-like MADS-box protein AGL6 isoform X4
Swissprot	Q7XUN2	5e-34	MAD17_ORYSJ; MADS-box transcription factor 17
TrEMBL	A0A199UL70	6e-35	A0A199UL70_ANACO; MADS-box transcription factor 17
TrEMBL	A0A426ZY62	7e-35	A0A426ZY62_ENSVE; Uncharacterized protein (Fragment)
STRING	OB04G29660.1	6e-33	(Oryza brachyantha)
STRING	ORGLA02G0240800.1	5e-35	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	4e-36	AGAMOUS-like 6

Publications ? help Back to Top
Duan Y, et al. Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.). Plant Mol. Biol., 2012. 80(4-5): p. 429-42 [PMID:22933119] Hu Y, et al. Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development. Mol Plant, 2015. 8(9): p. 1366-84 [PMID:25917758] Bai X, et al. Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice. Sci Rep, 2016. 6: p. 19022 [PMID:26744119]