PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00060-abinit-gene-1.16-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family LBD
Protein Properties Length: 288aa    MW: 32151.1 Da    PI: 8.1217
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00060-abinit-gene-1.16-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.41e-37141131100
                                                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeered 56 
                                                            aCaaCk++r+kC+++C+lapyfpa+++++f++vhk+FG+snv+k+lk+l+eeer++
  augustus_masked-scaffold00060-abinit-gene-1.16-mRNA-1  14 ACAACKHQRKKCTESCILAPYFPANRSREFQAVHKVFGVSNVTKILKNLREEERKE 69 
                                                            7******************************************************* PP

                                                 DUF260  57 amsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                                                            a++slv+eA++r++dPv G +g ++++  +l++ k++ ++ +++
  augustus_masked-scaffold00060-abinit-gene-1.16-mRNA-1  70 AVESLVWEACWRQKDPVLGPYGEYTRVFDELKNYKSHQSQKENQ 113
                                                            *********************************99988877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.01913114IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-3514108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MQRNNNGAQA ANPACAACKH QRKKCTESCI LAPYFPANRS REFQAVHKVF GVSNVTKILK  60
NLREEERKEA VESLVWEACW RQKDPVLGPY GEYTRVFDEL KNYKSHQSQK ENQLMPGGGI  120
GYKVVDPNLM GWGETNGIHD EGMANGGEVV GNTLNYNNLP NNHGNYNNLP NNNGNGIVDS  180
NLYGYSLDYE DKVIGQETVA SGGVPLQQNS INGFNHQQYY HPERGFKACS LGGTQEPYTR  240
GALAFSDIEA SFFKRSFLLF FLIASVQWRG AHFFKRSLLL FILIGVGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-211511112103LOB family transfactor Ramosa2.1
5ly0_B2e-211511112103LOB family transfactor Ramosa2.1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023928730.11e-120LOB domain-containing protein 12
TrEMBLA0A2I4EXR89e-77A0A2I4EXR8_JUGRE; LOB domain-containing protein 2-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127222534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.17e-41LOB domain-containing protein 2