PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold00091-abinit-gene-1.10-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Dof

Protein Properties

Length: 296aa MW: 32389.8 Da PI: 8.5683

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold00091-abinit-gene-1.10-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126	1.2e-39	37	97	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk augustus_masked-scaffold00091-abinit-gene-1.10-mRNA-1 37 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNK 94 7899****************************************************** PP zf-Dof 60 kss 62 +s augustus_masked-scaffold00091-abinit-gene-1.10-mRNA-1 95 RSA 97 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	24	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-33	39	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.134	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MDTAQWPQEI VVKPIEEIIS NTCPKPASLE RKARPQKEQA LNCPRCNSTN TKFCYYNNYS 60 LTQPRYFCKT CRRYWTEGGS LRNIPVGGGS RKNKRSASSS SNSSSSNTSS KNKLPDLVTP 120 QSLSQSSTQN PKIHEGHDLN LGFPTTQDFR TLTELVQVPS INNDNSNKNQ ISGTSSTTTN 180 TTTASHQLSA LELLTGITSR GFNSFMPMPV QDPNSVYTSG FPLVHDFKPT LNFSLDGLGV 240 GSGYGSFQGV QENSGRLLFP FEDLKQVSST TNGIEQNKEQ GDSAGYWTGM LGGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023879965.1	0.0	dof zinc finger protein DOF4.6-like
Swissprot	Q8LAP8	2e-71	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A2I4HA08	1e-157	A0A2I4HA08_JUGRE; dof zinc finger protein DOF4.6-like isoform X2
STRING	POPTR_0003s14450.1	1e-156	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	7e-63	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]