PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00099-abinit-gene-1.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 470aa    MW: 53156.9 Da    PI: 5.2842
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00099-abinit-gene-1.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.79.8e-14268314354
                                                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                                           ++h + Er RR+++N++++ Lr+l+P++     +K + a+++  A+eYIk+L
  augustus_masked-scaffold00099-abinit-gene-1.0-mRNA-1 268 TKHFATERHRRQHLNKKYDALRSLVPNP-----TKADRASVVGDAIEYIKEL 314
                                                           68**************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-15264331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.415265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-11268318No hitNo description
Gene3DG3DSA:4.10.280.102.0E-13268323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-11268314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MYEETACFDP NPMTEGTISV DGFSVPNNDF EVRLSMEELS YHHHNNHTPC HEDVAMDIEL  60
QQHLAFNIEN NTTNNTTTNL DNTHLIDNPY NLHEMQDMDN FNYHQQQQHL IDIQNGHQNF  120
DCSSYPATTP DLLNLFNMPR CSASSFMPNS SISFSNPTLQ QNPTNNYPNS LGFLGEVPTV  180
TDSPSGGSVF YDPVFHLNHL PQQPPLFREL FQSLPHGYAL PGSRNGSLFG TNGVVVDDRE  240
GCVYQEDGDV RQFENVLEFT GKTRDGETKH FATERHRRQH LNKKYDALRS LVPNPTKADR  300
ASVVGDAIEY IKELLRTVNE LKLLVEKKRC GRERSKRHKT ESEYGSGDLE SCGMKPLGGD  360
PDQSYNGSLR SSWLQRKSKD TEVDVRIIDD EVTIKLVQRK SSCLLFVSKV LDDLQLDLHH  420
VAGGHIGDFY SFLFNTKIYE GSSVYASAIA NKLIEVVDRQ CAAIQPTNSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023884643.10.0transcription factor bHLH91-like
TrEMBLA0A2N9F8E80.0A0A2N9F8E8_FAGSY; Uncharacterized protein
STRINGVIT_15s0107g00380.t011e-168(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.14e-79bHLH family protein