PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00105-abinit-gene-1.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 185aa    MW: 20692.6 Da    PI: 6.7216
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00105-abinit-gene-1.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000332850123
                                                          EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                                          y C+ C++ Fs+   L  H++ H
  augustus_masked-scaffold00105-abinit-gene-1.2-mRNA-1 28 YDCTFCKRGFSNAQALGGHMNIH 50
                                                          88*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.82E-72555No hitNo description
Gene3DG3DSA:3.30.160.602.0E-52554IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.782855IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MESDQPNPEN SEHVNSDDHQ GASQARSYDC TFCKRGFSNA QALGGHMNIH RKEKAVLKRV  60
VTNKSQPSSN STLPRNSSWP LETKPSSDER NTMKLPWMLA SQQGDRDETH VGDEYYNQVQ  120
QLPLFVETSS QKDHKPGSRL HTNIEKDLST TSTTHASSGS RIDLELRLGP EPQDPSAPTA  180
TQKFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023924698.11e-128transcriptional regulator TAC1-like
TrEMBLA0A2N9EUV47e-84A0A2N9EUV4_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.15e-18C2H2 family protein