PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00142-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 114aa    MW: 12490.3 Da    PI: 7.884
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00142-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS39.77.3e-1341100160
                                                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsv 57 
                                                           l+elL ecA +v+ g l+ ++++L+++s lasp+g+++qR+a+yf +A a r+++  
  augustus_masked-scaffold00142-abinit-gene-0.0-mRNA-1  41 LIELLGECASHVTIGCLHSVNTMLEHISYLASPKGTAIQRIASYFIKAFADRMLKGF 97 
                                                           6799*************************************************9955 PP

                                                  GRAS  58 sel 60 
                                                           ++l
  augustus_masked-scaffold00142-abinit-gene-0.0-mRNA-1  98 TGL 100
                                                           544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.54615114IPR005202Transcription factor GRAS
PfamPF035142.5E-1041100IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MAKAKQEGRS SLTSSHESSP GLGSPYPWLR SPRSEEGGLR LIELLGECAS HVTIGCLHSV  60
NTMLEHISYL ASPKGTAIQR IASYFIKAFA DRMLKGFTGL FCSENMMCSE NQFC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3768231e-120AK376823.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3137D09.
GenBankAK3768281e-120AK376828.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3137F09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023914043.11e-52scarecrow-like protein 3
TrEMBLF2EKZ56e-55F2EKZ5_HORVV; Predicted protein (Fragment)
STRINGVIT_13s0019g01220.t011e-28(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2149834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.17e-15scarecrow-like 3