PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00143-abinit-gene-1.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 563aa    MW: 62509.2 Da    PI: 8.3376
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00143-abinit-gene-1.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00087477499123
                                                           EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                           ++Cp+C k+F++   L  H r+H
  augustus_masked-scaffold00143-abinit-gene-1.2-mRNA-1 477 HECPICLKVFPSGQALGGHKRSH 499
                                                           79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.429936IPR007087Zinc finger, C2H2
PfamPF139123.8E-5932IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.4E-4931IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.05931IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.33E-8931No hitNo description
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.33E-892119No hitNo description
SMARTSM003550.03397119IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.57597124IPR007087Zinc finger, C2H2
PfamPF139121.5E-799121IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
SuperFamilySSF576673.41E-6389411No hitNo description
PfamPF139122.1E-12389413IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.055389416IPR007087Zinc finger, C2H2
SMARTSM003550.06389411IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280391411IPR007087Zinc finger, C2H2
SuperFamilySSF576673.41E-6472499No hitNo description
PfamPF139128.3E-13477499IPR007087Zinc finger, C2H2
PROSITE profilePS501578.995477499IPR007087Zinc finger, C2H2
SMARTSM003550.071477499IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280479499IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MEEVQEFKYM CKFCSKTFPC GRSLGGHMRS HLTNNSAGKD KKLSKTKLSP SKKGRKHTNA  60
ELGVEPETQA GYGLRENPKK TKRLADSSEN TFSLYNRFCK ECGKEFQSWK ALFGHMKCHS  120
EKEKGSSSLD DQDSWTSANQ KLVIDSQSDN ETTAPNKKRR SERRRTRYTA AATSSSLSVA  180
NASSSVSEIE QEQEEVAMCL MMLSRDVGHW GGLNSAAESS DNNSVYLEAP ESFQTNLITK  240
IVGKTSVFNG NKIFQVKKLS DKKLELGNLD FEDVQGKQSE FCAPGNSRTL PRMIETEVST  300
DGIFKSDMMK KSQIEDQLGF EDSEVKLGKV FSKETASDQA QLASLKCNSS KKKVRDSYDP  360
ELSSDPLKKF NINDLDSEFC KSSHKRSKFE CTTCNKVFHS YQALGGHRAS HKKIKGCFAT  420
RIEGSENSIE TEISLDPSAD SKLIKSGYNE KPTEQDRVAV CDVKIDTGIG SKKSNGHECP  480
ICLKVFPSGQ ALGGHKRSHL VAVSEARNNP TIVIQKPVPE IQDFLDLNLP APVEEENNGH  540
VGFTPWWVGS TRKHEALVSL ISN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023918117.10.0uncharacterized protein LOC112029657
TrEMBLA0A2N9HIM60.0A0A2N9HIM6_FAGSY; Uncharacterized protein
STRINGEOY220000.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-37C2H2-like zinc finger protein