PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00177-abinit-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 631aa    MW: 71528.6 Da    PI: 6.9994
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00177-abinit-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3781.2e-1152586291374
                                                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsv 57 
                                                           l++lL++cAea  ++dl+ a+++L +++ +asp gd  qRla++f++AL+arla+++
  augustus_masked-scaffold00177-abinit-gene-0.6-mRNA-1 258 LRTLLMHCAEAAGNNDLKGANEVLLQIRLHASPFGDGSQRLAHCFANALEARLAGTG 314
                                                           6789***************************************************** PP

                                                  GRAS  58 selykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHi 114
                                                           sely+al++++ s   s++ l+a++lf  ++P++k+s++ + q+I++ +e+++r+Hi
  augustus_masked-scaffold00177-abinit-gene-0.6-mRNA-1 315 SELYAALSAKKMS---SIHMLKAYRLFASACPFMKISYFFTAQMIMDLAEKSNRLHI 368
                                                           ********99999...9**************************************** PP

                                                  GRAS 115 iDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169
                                                           i f+i  G+QWpaL+q L++Rp+gpp lRiTg++ p++g   + ++eetg+rLa+++
  augustus_masked-scaffold00177-abinit-gene-0.6-mRNA-1 369 IHFGILCGFQWPALIQRLSERPGGPPALRITGIDIPQPGfrPASMMEETGQRLANYC 425
                                                           **************************************9*9**************** PP

                                                  GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserde 226
                                                           e+++vpfe+n+ +++++e++++++L+++++E+++Vn+ ++   llde+v ++s+rd+
  augustus_masked-scaffold00177-abinit-gene-0.6-mRNA-1 426 ERFNVPFEYNA-IVQKWETIQVDDLKINKDEVTVVNCLYRFRCLLDETVVVSSPRDT 481
                                                           ***********.799****************************************** PP

                                                  GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                                                           vL+l+k+++P+v+ +   +  +n++ F  rf eal+++sa+fd+++a+++re++eri
  augustus_masked-scaffold00177-abinit-gene-0.6-mRNA-1 482 VLNLIKRINPDVFFHGIVNGAYNAPIFTSRFREALYFFSAVFDMFDANASREDKERI 538
                                                           ********************************************************* PP

                                                  GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                                                           + E+e+ g+e+ nv+aceg++r+er et+++W+ r ++aG++++pl++++++++k  
  augustus_masked-scaffold00177-abinit-gene-0.6-mRNA-1 539 VFEQEIYGKEVLNVIACEGEKRVERPETYRQWQVRNMRAGLRQLPLNQEIVMKVKDH 595
                                                           ********************************************************* PP

                                                  GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                                           ++ ++++ + v+e+s++lv+gWk+r L ++S+W+
  augustus_masked-scaffold00177-abinit-gene-0.6-mRNA-1 596 VKLCYNKDFLVDEDSQWLVQGWKGRILSALSCWK 629
                                                           *****999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.111232609IPR005202Transcription factor GRAS
PfamPF035144.1E-113258629IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MASNERCYSS EESDSADAVL NYIGHILMKE GLENGTCMFP DATLQAAEKS FYDVLGEKYP  60
SSINQTPSFC NCHGCKNNVT ANNAGESSSV CDLCQQKSCY VLAPPVEYTY QSISSSSMQW  120
FSPPSNFFST VGDSQSFLPC KDAAKETWGL LPQGNHMNLL VEKGKKDQSA SRLMELKKHH  180
QQHQIECEPR RKNKHLAVYN EVPDEPSEMF DRVLLFNNEA DESAVYNPEA SQIGLGKGSN  240
CEPTRRRKRV NKKDFVDLRT LLMHCAEAAG NNDLKGANEV LLQIRLHASP FGDGSQRLAH  300
CFANALEARL AGTGSELYAA LSAKKMSSIH MLKAYRLFAS ACPFMKISYF FTAQMIMDLA  360
EKSNRLHIIH FGILCGFQWP ALIQRLSERP GGPPALRITG IDIPQPGFRP ASMMEETGQR  420
LANYCERFNV PFEYNAIVQK WETIQVDDLK INKDEVTVVN CLYRFRCLLD ETVVVSSPRD  480
TVLNLIKRIN PDVFFHGIVN GAYNAPIFTS RFREALYFFS AVFDMFDANA SREDKERIVF  540
EQEIYGKEVL NVIACEGEKR VERPETYRQW QVRNMRAGLR QLPLNQEIVM KVKDHVKLCY  600
NKDFLVDEDS QWLVQGWKGR ILSALSCWKV A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5326462825378Protein SCARECROW
5b3h_A2e-5326462824377Protein SCARECROW
5b3h_D2e-5326462824377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894867.10.0scarecrow-like protein 14
TrEMBLA0A2N9G7240.0A0A2N9G724_FAGSY; Uncharacterized protein
STRINGAquca_009_00954.10.0(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein