PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00231-abinit-gene-1.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 182aa    MW: 20930.8 Da    PI: 5.7551
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00231-abinit-gene-1.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-053153123
                                                          EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                                          y+C +C++ F++   L  H++ H
  augustus_masked-scaffold00231-abinit-gene-1.4-mRNA-1 31 YECVYCKRGFTTAQALGGHMNIH 53
                                                          99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.7E-62958No hitNo description
Gene3DG3DSA:3.30.160.605.5E-42955IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.2E-63155IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.8453158IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEYNCQEDSK SSSEESDRSV QNDDMGTGRS YECVYCKRGF TTAQALGGHM NIHRKDRVKT  60
RPSSVPSVSS KADENYVNLR SYTSIQSYPP HYNSTAPEVQ VSSQVTFPVS AWHMRPPNTQ  120
HTDHVQNNPL HPNLFEEDWR RSLSLQVGPT HVVVEHDREK RREDGNEEDD ELDLELRLGH  180
YP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023875023.11e-133transcriptional regulator SUPERMAN-like
TrEMBLA0A2N9H8R03e-72A0A2N9H8R0_FAGSY; Uncharacterized protein
STRINGEOX945222e-69(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-13C2H2 family protein