PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold00231-abinit-gene-1.6-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

C2H2

Protein Properties

Length: 192aa MW: 21714.7 Da PI: 9.7583

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold00231-abinit-gene-1.6-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7e-05	38	60	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H+++H augustus_masked-scaffold00231-abinit-gene-1.6-mRNA-1 38 FTCNFCKRQFRSAQALGGHMNVH 60 89*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.71E-6	35	64	No hit	No description
Pfam	PF13912	3.8E-7	37	62	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0067	38	60	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.053	38	65	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	40	60	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MEKPYLSKGE GKGKWDSNNF GFEEDHSCGV SWPAKQVFTC NFCKRQFRSA QALGGHMNVH 60 RKDRARLRLL PSSSSNSHNH NPNFTLSPSS KFLPYTHHPL PFLSSPSSSS FDEEKKLELP 120 HLDPLNPQGR NNMNKKRIIG GVLGFEELKG TFARKDELKV LKKEDTIKLG LEIGLLKDPQ 180 ADLDLELRLG FL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023875024.1	1e-114	transcriptional regulator SUPERMAN-like
TrEMBL	A0A2N9EST0	6e-59	A0A2N9EST0_FAGSY; Uncharacterized protein
STRING	POPTR_0002s04260.1	2e-38	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2843	31	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23130.1	1e-28	C2H2 family protein