PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00236-abinit-gene-1.7-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 97aa    MW: 11277.7 Da    PI: 6.9417
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00236-abinit-gene-1.7-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3413.3e-131781799
                                                          E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                                                    B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75
                                                          ++pk+f++++g++   s    l+ ++g +W+v+l  + + g+++l+kGWkeF++    k
  augustus_masked-scaffold00236-abinit-gene-1.7-mRNA-1  1 MIPKTFIRKYGEN--LSSPTFLQLPNGAKWKVEL--TYHNGEVWLQKGWKEFAECCTSK 55
                                                          69********977..555688899**********..888888***********998877 PP

                                                          .TT-EEEEEE-SSSEE..EEEEE-S CS
                                                    B3 76 .egDfvvFkldgrsefelvvkvfrk 99
                                                            g  +vF+++++s f  +v +f++
  augustus_masked-scaffold00236-abinit-gene-1.7-mRNA-1 56 qGGHLLVFRFEDNSHF--HVLIFDE 78
                                                          5789*****9998999..***9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-17178IPR015300DNA-binding pseudobarrel domain
PfamPF023626.0E-10178IPR003340B3 DNA binding domain
CDDcd100172.99E-13177No hitNo description
SMARTSM010190.0048179IPR003340B3 DNA binding domain
PROSITE profilePS5086313.93179IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.2E-19279IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MIPKTFIRKY GENLSSPTFL QLPNGAKWKV ELTYHNGEVW LQKGWKEFAE CCTSKQGGHL  60
LVFRFEDNSH FHVLIFDESA TEIDYPSNRP SSNEQAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023908828.12e-40B3 domain-containing protein At1g49475-like
TrEMBLA0A2I4FEY42e-33A0A2I4FEY4_JUGRE; putative B3 domain-containing protein Os03g0621600
STRINGEOX912731e-27(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.12e-19B3 family protein