PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00246-abinit-gene-1.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 580aa    MW: 64918.1 Da    PI: 4.708
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00246-abinit-gene-1.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS442.92.2e-1352115802374
                                                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs 58 
                                                           ++ Ll+cA a+++g+  +a+a++++l++++s +gdp qR+aay++e+Laar+a+s++
  augustus_masked-scaffold00246-abinit-gene-1.4-mRNA-1 211 RQMLLDCAGALADGNIMEASAMINNLRNMVSIQGDPPQRIAAYMVEGLAARMASSGK 267
                                                           689****************************************************** PP

                                                  GRAS  59 elykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHii 115
                                                            ly+al+++e +   ss++laa+++++ev+P++kf++++aN a+ ea++ e+rvHi+
  augustus_masked-scaffold00246-abinit-gene-1.4-mRNA-1 268 CLYNALKCKEPP---SSDRLAAMQILFEVCPCFKFGFMAANGAMIEAFKDEKRVHIV 321
                                                           ***********9...9***************************************** PP

                                                  GRAS 116 DfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                                                           Dfdi+qG Q+++L+q++a+  ++pp++R+Tg+++pes+  s   l+ +g+rL+k+Ae
  augustus_masked-scaffold00246-abinit-gene-1.4-mRNA-1 322 DFDINQGSQYITLIQTIANNLGKPPHVRLTGIDDPESVqrSVGGLKIIGQRLEKLAE 378
                                                           ************************************9989999************** PP

                                                  GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdev 227
                                                           +l+vpfef++ va++++ +++++L+++pgEal Vn+++qlh+++desvs+ ++rd++
  augustus_masked-scaffold00246-abinit-gene-1.4-mRNA-1 379 ALKVPFEFRA-VASKTSIITPSMLNCRPGEALLVNFAFQLHHMPDESVSTVNQRDQL 434
                                                           **********.7********************************************* PP

                                                  GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                                                           L++vksl+Pk+v+vveq++++n+++Fl rf+ea +yysa+f+sl+a+lpres++r++
  augustus_masked-scaffold00246-abinit-gene-1.4-mRNA-1 435 LRMVKSLNPKLVTVVEQDVNTNTAPFLPRFVEAYNYYSAVFESLDATLPRESQDRMN 491
                                                           ********************************************************* PP

                                                  GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                                                           vEr++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF++ p++ k+ ++++ l+
  augustus_masked-scaffold00246-abinit-gene-1.4-mRNA-1 492 VERQCLARDIVNIVACEGEERIERYEVAGKWRARMTMAGFTSCPMGPKVIDTIQNLI 548
                                                           ********************************************************* PP

                                                  GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                                           r++ ++ y++++e g+l +gW++++L+++SaWr
  augustus_masked-scaffold00246-abinit-gene-1.4-mRNA-1 549 REYCDR-YKLKKEMGALHFGWEEKNLIVASAWR 580
                                                           ****66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.634184561IPR005202Transcription factor GRAS
PfamPF035147.8E-133211580IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MSLVRAAGLS ATSYRNSKLY SLKGSDDSPS LSTQILGSDK HKTIYVTDSY SSESYEKYFL  60
DSPTEELIQP SNSGISGNSF HPNGISMGTR NPFDTSLMSM RHRDAYQSNF ESDYLESQSP  120
DPIDYDEDKM RLKLQELERA LLEDNDDDDD DDDDDDIFGT DHSMEIDGEW ADPVHNALLH  180
DSPKESSSTD SNLSSISSNK EISQVSTRTP RQMLLDCAGA LADGNIMEAS AMINNLRNMV  240
SIQGDPPQRI AAYMVEGLAA RMASSGKCLY NALKCKEPPS SDRLAAMQIL FEVCPCFKFG  300
FMAANGAMIE AFKDEKRVHI VDFDINQGSQ YITLIQTIAN NLGKPPHVRL TGIDDPESVQ  360
RSVGGLKIIG QRLEKLAEAL KVPFEFRAVA SKTSIITPSM LNCRPGEALL VNFAFQLHHM  420
PDESVSTVNQ RDQLLRMVKS LNPKLVTVVE QDVNTNTAPF LPRFVEAYNY YSAVFESLDA  480
TLPRESQDRM NVERQCLARD IVNIVACEGE ERIERYEVAG KWRARMTMAG FTSCPMGPKV  540
IDTIQNLIRE YCDRYKLKKE MGALHFGWEE KNLIVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6321757926378Protein SCARECROW
5b3h_A2e-6321757925377Protein SCARECROW
5b3h_D2e-6321757925377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX0290810.0KX029081.1 Castanea sativa Scarecrow-like 3 (SCL3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023871722.10.0scarecrow-like protein 1
RefseqXP_023871723.10.0scarecrow-like protein 1
RefseqXP_023871724.10.0scarecrow-like protein 1
RefseqXP_023871725.10.0scarecrow-like protein 1
RefseqXP_023871726.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A191UPV50.0A0A191UPV5_CASSA; Scarecrow-like 3
STRINGXP_010104285.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]