PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00257-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 311aa    MW: 33801.4 Da    PI: 8.2158
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00257-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.92.7e-191257147
                                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                                          +g+W++eEde l ++v+++G+++W++I++ ++ gR++k+c++rw + 
  augustus_masked-scaffold00257-abinit-gene-0.0-mRNA-1 12 KGPWSAEEDEALQRLVQKHGPRNWSLISKAIP-GRSGKSCRLRWCNQ 57
                                                          79******************************.***********985 PP
2Myb_DNA-binding55.71.1e-1766108347
                                                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                           ++T+eEde +++a++++G++ W+tIar +  gRt++ +k++w++ 
  augustus_masked-scaffold00257-abinit-gene-0.0-mRNA-1  66 AFTPEEDETIIRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 108
                                                           79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.81762IPR017930Myb domain
SuperFamilySSF466891.22E-329105IPR009057Homeodomain-like
SMARTSM007171.3E-171160IPR001005SANT/Myb domain
PfamPF002491.0E-181257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-261365IPR009057Homeodomain-like
CDDcd001671.80E-161456No hitNo description
SMARTSM007171.2E-1463111IPR001005SANT/Myb domain
PROSITE profilePS5129421.22964113IPR017930Myb domain
CDDcd001677.28E-1266109No hitNo description
Gene3DG3DSA:1.10.10.602.2E-2366112IPR009057Homeodomain-like
PfamPF002496.8E-1566108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAMNKMEMDR IKGPWSAEED EALQRLVQKH GPRNWSLISK AIPGRSGKSC RLRWCNQLSP  60
QVEHRAFTPE EDETIIRAHA RFGNKWATIA RLLSGRTDNA IKNHWNSTLK RKCFSDGGYD  120
GSFDQQQLQP LKRSMSAGSD APVPIYMNPS SPSGSDVSDS SVPVVSSSHV YRPVARTGSV  180
VPPIETTSST TATNDPPTSL SLSLPGVESC EVSNAVSQVA NTLNLMPEKE KVGNGEEDRS  240
IGLVPLSAEL MAVMQEMIKK EVRSYMTGLK EQTGAGSGIC MGMGMGVGMG MRGEDGFREV  300
AVKRIGVSRI D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-41111133105MYB PROTO-ONCOGENE PROTEIN
1h88_C9e-411111257158MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-411111257158MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-41111133105C-Myb DNA-Binding Domain
1msf_C2e-41111133105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023918492.10.0transcription factor MYB44-like
SwissprotO231608e-98MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2N9FEW31e-151A0A2N9FEW3_FAGSY; Uncharacterized protein
STRINGVIT_07s0129g01050.t011e-134(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-90myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]