PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00296-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family RAV
Protein Properties Length: 334aa    MW: 37773.7 Da    PI: 8.7304
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00296-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.9e-1655104156
                                                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                                           s+ykGV   + +grW A+I+d      ++r++lg+f+ +eeAaka++ a+++++g+
  augustus_masked-scaffold00296-abinit-gene-0.2-mRNA-1  55 SKYKGVVPQP-NGRWGAQIYDK-----HQRVWLGTFDEEEEAAKAYDIAALRFRGH 104
                                                           89****9888.8*********3.....5**************************97 PP
2B394.85.7e-30188288197
                                                           EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE.. CS
                                                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliy 52 
                                                           f+kv tpsdv+k++rlv+pk+ ae++     +   ++++ l +ed+ g++W+++++y
  augustus_masked-scaffold00296-abinit-gene-0.2-mRNA-1 188 FEKVVTPSDVGKLNRLVIPKQQAEKYfplptE-GAAKGVLLNFEDSIGKVWRFRYCY 243
                                                           99*************************99963.446999****************** PP

                                                           EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                                                    B3  53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                                           + +s++yvltkGW++Fvk+++Lk+gD v F+++   +++++++++
  augustus_masked-scaffold00296-abinit-gene-0.2-mRNA-1 244 WSSSQSYVLTKGWSKFVKEKNLKAGDRVSFQRSMGPDKKFFIGWR 288
                                                           *******************************88667777899887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.26E-2655112No hitNo description
PfamPF008474.2E-1055104IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-1755112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-2056111IPR001471AP2/ERF domain
PROSITE profilePS5103220.27156111IPR001471AP2/ERF domain
SMARTSM003808.0E-3056117IPR001471AP2/ERF domain
PRINTSPR003673.2E-55768IPR001471AP2/ERF domain
PRINTSPR003673.2E-57793IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.5E-38184288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.76E-30186285IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-26187285No hitNo description
SMARTSM010191.1E-21188291IPR003340B3 DNA binding domain
PROSITE profilePS5086314.015188291IPR003340B3 DNA binding domain
PfamPF023623.2E-27188288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAMNCLDEST SGSITSSSFT VKRSMENSCQ MGSGSSAKSN SEIGIEADSK KLPSSKYKGV  60
VPQPNGRWGA QIYDKHQRVW LGTFDEEEEA AKAYDIAALR FRGHNAITNL QHPLEPNKDA  120
NELCFLNSHS KDEIVDMLRK HSYTYELEQS EYNICACHGT RKRHRDNWLM DTPVSESELF  180
DVAREYLFEK VVTPSDVGKL NRLVIPKQQA EKYFPLPTEG AAKGVLLNFE DSIGKVWRFR  240
YCYWSSSQSY VLTKGWSKFV KEKNLKAGDR VSFQRSMGPD KKFFIGWRPL NGSSFVEVLD  300
KVKSSASLQA VKVVRLFGVN ILETPTSSFV TNNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5118529311120DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023903809.10.0AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-119RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A2N9GQE51e-178A0A2N9GQE5_FAGSY; Uncharacterized protein
STRINGXP_010265251.11e-133(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-120related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]